Locus 467

Sequence ID 2L_DroMel_CAF1
Location 1,365,982 – 1,366,080
Length 98
Max. P 0.947018
window751

overview

Window 1

Location 1,365,982 – 1,366,080
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 76.52
Mean single sequence MFE -25.66
Consensus MFE -17.54
Energy contribution -19.10
Covariance contribution 1.56
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.68
SVM decision value 1.37
SVM RNA-class probability 0.947018
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1365982 98 - 22407834
ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUAUACACUCAGAAAAAAAUUGCACUUCAUAUGGGC
.(((((..(((((..(....)((((((.(((....))))))))).)))))..)))))............((((....................)))). ( -24.55)
>DroSec_CAF1 123003 79 - 1
ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUAUACACUUAGAUAGA-------------------
.(((((..(((((..(....)((((((.(((....))))))))).)))))..)))))....((((......))))....------------------- ( -25.80)
>DroSim_CAF1 127399 92 - 1
ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUGUACACUUGGAAAAAA------CUUUACAUGUUC
.(((((..(((((..(....)((((((.(((....))))))))).)))))..))))).(((...........))).....------............ ( -25.60)
>DroEre_CAF1 141382 76 - 1
ACUGUGAAGGAUGG-GGAAACAGACGGCAAUGGCAGUUCCGUCU---------GCAGCUCCUCUCUGCACUCAGAAAAAU---GCAC---------AC
...(((.(((..((-((...(((((((.(((....)))))))))---------)...))))..))).)))..........---....---------.. ( -23.60)
>DroYak_CAF1 126488 86 - 1
ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUCUACACUCAGAGAAAA---GCAC---------AC
..((((..(((((..(....)((((((.(((....))))))))).)))))..))))(((..(((((......)))))..)---))..---------.. ( -30.60)
>DroAna_CAF1 149207 81 - 1
ACUGGAGAUGA--GGGGAAACAGACGGCAAUGCCAGUUCCGUCUACAUCUCUACCAUCUCUUUGAUACAUUCAGAAAAAA---AGA------------
....((((((.--(((((...((((((.(((....)))))))))...)))))..))))))(((((.....))))).....---...------------ ( -23.80)
>consensus
ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUAUACACUCAGAAAAAA___GCAC__________C
.(((((..(((((..(....)((((((.(((....))))))))).)))))..)))))......................................... (-17.54 = -19.10 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:52 2006