Locus 4668

Sequence ID 2L_DroMel_CAF1
Location 13,396,592 – 13,396,707
Length 115
Max. P 0.540873
window7380

overview

Window 0

Location 13,396,592 – 13,396,707
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 83.39
Mean single sequence MFE -29.01
Consensus MFE -16.53
Energy contribution -16.17
Covariance contribution -0.36
Combinations/Pair 1.26
Mean z-score -2.04
Structure conservation index 0.57
SVM decision value 0.01
SVM RNA-class probability 0.540873
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13396592 115 + 22407834
CCGAAUCGCUCUCGAUCAUCCUGAGGAAUAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUCUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUGGACUU
((((((((....)))......((((((....((...))...))))))...)))))...............((((.................))))(((((.......)))))... ( -24.73)
>DroSec_CAF1 8728 115 + 1
CCGAGUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUUUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUAGACUU
.((((.....))))......(((.(((((((((..(((.............((((..(((.........))).))))..............)))..)))..)))))).))).... ( -24.13)
>DroSim_CAF1 8978 115 + 1
CCGAGUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUUUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUGGACUU
.((((.....))))........(((((..((((..(((...............))).)))).)))))...((((.................))))(((((.......)))))... ( -26.19)
>DroEre_CAF1 8742 115 + 1
CCACAUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCGGCCUUGGGCUCCAUCUCCCGCUUGGCCUGGCCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCGGGACUU
....((((....))))..(((((.(((((((((..(((..(....)((((..(((((.............)))))))))............)))..)))..)))))))))))... ( -32.92)
>DroAna_CAF1 53528 115 + 1
CCUCGUCGCCCUCGAUGAGCCGCAGAAGAAUAGUGGCUUCGUCUUCCUCUUUGGGCGCUGCCUCCUUCUUGGCCAAUAUCUUUUUCUUCUUGGCUUCCAAUUUGGCCAAGGUUUU
..((((((....))))))((((.(((((....(.(((..(((((........)))))..))).))))))))))..............((((((((........)))))))).... ( -37.10)
>consensus
CCGAGUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUCUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUGGACUU
....((((....))))..(((...(((((((((..(((...............))).)))..........((((.................))))......))))))..)))... (-16.53 = -16.17 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:09 2006