Locus 4664

Sequence ID 2L_DroMel_CAF1
Location 13,380,781 – 13,380,876
Length 95
Max. P 0.713611
window7375

overview

Window 5

Location 13,380,781 – 13,380,876
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 79.02
Mean single sequence MFE -15.70
Consensus MFE -6.00
Energy contribution -7.80
Covariance contribution 1.80
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.38
SVM decision value 0.38
SVM RNA-class probability 0.713611
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13380781 95 + 22407834
AUAUGUAUCUUAUCUUUAGAAUACGUGUCUCAAACACGAUUUCUCAAAUGAGAUUCCGCUUUCAAUAUUCCUAUAGAGAGCAUACAACAAUGGUU
...((((((((((.((.((((..(((((.....)))))..)))).))))))))....((((((.(((....))).)))))).))))......... ( -21.30)
>DroSec_CAF1 1929 86 + 1
AUA----UCUUAUCAUUAGAAUACGUGUCUCAAACACGAUUUCUAAAAUGAGAUUCCGCUUUCAAUUUUUCAAUAUAGCGU-----ACAAUUGUU
..(----((((((..((((((..(((((.....)))))..)))))).)))))))..((((................)))).-----......... ( -16.89)
>DroSim_CAF1 1790 86 + 1
AUA----UCUUAUCAUUAGAAUACGUGUCUCUAACACGAUUUCUAAAAUGAGAUUCCGCUUUCAAUUUUUCAAUAGAGCGU-----ACAAUUGUU
..(----((((((..((((((..(((((.....)))))..)))))).)))))))..((((((............)))))).-----......... ( -18.30)
>DroEre_CAF1 1767 86 + 1
AUA----UCUUAUCUUUAGAAUACGUGUCUCAAACGCGAUAUUUAAUAUGAGCUUCAGCUUUCAAUUUUCCAAUUGAGCGU-----ACAAUUUUA
...----.(((((..(((((...(((((.....)))))...))))).))))).....((.(((((((....))))))).))-----......... ( -12.10)
>DroYak_CAF1 1768 74 + 1
AUA----UCUUAUCUUUAGAAUACGUGUCUCAAACACGAUAUUU------------AGCCUUUAAUUUUCUAAUUGAGUGU-----ACAAUUUUA
...----...........((((((((((.....))))).)))))------------.((.(((((((....))))))).))-----......... (  -9.90)
>consensus
AUA____UCUUAUCUUUAGAAUACGUGUCUCAAACACGAUUUCUAAAAUGAGAUUCCGCUUUCAAUUUUCCAAUAGAGCGU_____ACAAUUGUU
.......((((((...(((((..(((((.....)))))..)))))..)))))).......................................... ( -6.00 =  -7.80 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:03 2006