Locus 465

Sequence ID 2L_DroMel_CAF1
Location 1,360,155 – 1,360,260
Length 105
Max. P 0.825040
window748

overview

Window 8

Location 1,360,155 – 1,360,260
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -36.92
Consensus MFE -23.81
Energy contribution -24.57
Covariance contribution 0.75
Combinations/Pair 1.31
Mean z-score -1.89
Structure conservation index 0.65
SVM decision value 0.69
SVM RNA-class probability 0.825040
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1360155 105 + 22407834
UUCAAUGGCAUUUGGCACCGUGGUAGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCAGUGCCAUUACCAUCCAACCGGGGACAGUUCUUCUG
...(((((((((.(((...((((..(((.....)))..)))).....((((.........)))).))).)))))))))...........(((((....))))).. ( -36.50)
>DroSec_CAF1 117278 105 + 1
UUCGAUGGCAUUGGGCACAGUGGUGGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCGGUACCAUUACCAUCCAACCGGGGGCAGUUCUUCUG
...(((((.(((((((...((((..(((.....)))..)))).....((((.........)))).))))))).))))).((.(((....)))))(((.....))) ( -37.40)
>DroSim_CAF1 121674 105 + 1
UUCGAUGGCAUUGGGCACAGUGGUGGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCGGUGCCAUUACCAUCCAACCGGGGGCAGUUCUUCUG
...(((((((((((((...((((..(((.....)))..)))).....((((.........)))).))))))))))))).((.(((....)))))(((.....))) ( -44.00)
>DroEre_CAF1 135729 87 + 1
UUCGAUGGCAUUCGGCACGGUGGAGGACACAAAGUCAUCCACAUCGA------------------GCCCAGUGGCAUUGCCAUCCAGCCCGGGACAGUUCUUCUG
...(((((((.((((....(((((.(((.....))).))))).))))------------------(((....)))..))))))).....(((((......))))) ( -29.70)
>DroYak_CAF1 120582 105 + 1
CUCGAUGGCAUUCGGCACCGUGGUGGACACAAAGUCAUCCACACCGAGGCCAUCUUCCCCAGCCAGCCCAGUGCCAUUGCCAUCCAAGCGGGGACAGUUCCUCUG
...(((((((...(((((.((((..(((.....)))..)))).....(((...........)))......)))))..))))))).....(((((....))))).. ( -38.20)
>DroAna_CAF1 143587 102 + 1
CUCGAUGGCAUUUGGCACCACAGUGGUGACGAAGUCAUCCACAUCCG---UAUCGUCUCCGAUCAGUUCAGUGCUGUUGCCAUCCAGCUGGGGGCACUUGCUCUG
((.(((((((..((((((....((((((((...)))).))))....(---.((((....)))))......)))))).))))))).))...(((((....))))). ( -35.70)
>consensus
UUCGAUGGCAUUCGGCACCGUGGUGGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCAGUGCCAUUACCAUCCAACCGGGGACAGUUCUUCUG
...(((((((((.(((...((((..(((.....)))..)))).....((((.........)))).))).)))))))))....(((......)))........... (-23.81 = -24.57 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:50 2006