Locus 4645

Sequence ID 2L_DroMel_CAF1
Location 13,300,675 – 13,300,773
Length 98
Max. P 0.597074
window7339

overview

Window 9

Location 13,300,675 – 13,300,773
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.70
Mean single sequence MFE -27.68
Consensus MFE -19.10
Energy contribution -18.88
Covariance contribution -0.22
Combinations/Pair 1.20
Mean z-score -1.35
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.597074
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13300675 98 + 22407834
GUUUCUCGGCAUUAAUCAUGACUGAGCUCAUCAUGGUGGCUCUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUAAACUGCAUUUAAUCUUUAUUGU
........(((.....((.(((.((((.(((....)))))))(((((((((.......)))).)))))))).)).....)))................ ( -24.20)
>DroPse_CAF1 15606 96 + 1
GCUUCUCGGCUCUGAUCAUGACUGAGCUGAUCAUGGUGGCCCUCACUGUGCGCACUUGGCACAGGUGAGUUUCUACGAA-GAAUACGAGCUAU-GAGC
((((...(((((((((((.(......)))))))..((((..((((((((((.......))))).)))))...))))...-......)))))..-)))) ( -31.80)
>DroSim_CAF1 13519 97 + 1
GUUUCUCGGCAUUAAUCAUGACUGAGCUCAUCAUGGUGGCACUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUAAAC-GCUUUUAAUCUUUAUUGU
(((((...((....(((((((.((....))))))))).))(((((((((((.......)))).)))))))...).))))-.................. ( -25.10)
>DroEre_CAF1 14733 98 + 1
GUUUCUCGGCAUUAAUCAUGACGGAGCUCAUCAUGGUGGCUCUCACCGUUCGUACUUGGCAUAGGUGAGUUUUGUCAACUUUUUUCAACUUUUCGUGU
..................((((((((((((((((((((.....))))))..((.....))...))))))))))))))..................... ( -25.80)
>DroYak_CAF1 13403 97 + 1
GUUUCUCAGCAUUAAUCAUGACGGAGCUCAUAAUGGUGGCUCUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUCAACUUU-UUAAACCUUUUGUGU
..................(((((((((((((...((((.....))))((((.......))))..))))))))))))).....-............... ( -25.60)
>DroPer_CAF1 15502 96 + 1
GCUUCUCGGCUCUGAUCAUGACUGAGCUGAUCAUGGUGGCCCUCACUGUGCGCACUUGGCACAGGUGAGUUCCUACGAA-AAAUACGAGCUAU-GAGC
((...(((((((...........)))))))(((((((((..((((((((((.......))))).)))))..))..((..-.....)).)))))-)))) ( -33.60)
>consensus
GUUUCUCGGCAUUAAUCAUGACUGAGCUCAUCAUGGUGGCUCUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUCAAC_GAAUUCAACCUUU_GUGU
.......(((....(((((((.........))))))).)))((((((((((.......)))).))))))............................. (-19.10 = -18.88 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:29 2006