Locus 4644

Sequence ID 2L_DroMel_CAF1
Location 13,295,570 – 13,295,672
Length 102
Max. P 0.578016
window7338

overview

Window 8

Location 13,295,570 – 13,295,672
Length 102
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 76.47
Mean single sequence MFE -28.86
Consensus MFE -14.87
Energy contribution -16.77
Covariance contribution 1.89
Combinations/Pair 1.27
Mean z-score -1.74
Structure conservation index 0.52
SVM decision value 0.09
SVM RNA-class probability 0.578016
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13295570 102 + 22407834
ACGAAUUGCGG-------CAAUUGUUUGUUAUGGCCACUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC----CUCAGCUGAAUCGCAGUUC
..(((((((((-------((((((((.......((....)).......)))))))))......((((((((((((............)))----))..))))))))))))))) ( -33.04)
>DroSec_CAF1 8423 102 + 1
ACGAAUUGCGG-------CAAUUGUUUGUUAUGGCCGCUGUAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC----CUCAGCUGAAUCGCAGUUC
..(((((((((-------((((((((.(((((((...)))))))....)))))))))......((((((((((((............)))----))..))))))))))))))) ( -34.00)
>DroSim_CAF1 8431 102 + 1
ACGAAUUGCGG-------CAAUUUUUUGUUAUGGCCGCUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC----CUCAGCUGAAUCGCAGUUC
..(((((((((-------.....(((((((.((.((((((.(((((.((.......))...))))))))))).)))))))))((((....----))))......))))))))) ( -31.40)
>DroEre_CAF1 9638 102 + 1
UCGAAUUGCGG-------CAAUUGUUUGUUACGGCCGCUGCAAUUGUUAACGAUUGCAUUUCUAUUCACUGAGAAUUCAGGAUGAGAGAC----GUCAGCUGAAUCGCAAUUC
..(((((((((-------(((....))))..((((.((((((((((....))))))))(((((..((.(((......)))))..))))).----))..))))...)))))))) ( -32.10)
>DroYak_CAF1 8321 102 + 1
ACGAAUUGCGG-------CAAUUGUUUGUUAUGGCCACUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGAGUAUACAGGAUGAAAGAC----CUCAGCUGAAUCGGUUUUC
..((((((.((-------(...((.....))..)))..((((((((....))))))))...))))))..........(((..(((.....----.))).)))........... ( -21.90)
>DroPer_CAF1 10086 96 + 1
AUGCAGUGCUGUGCAGUGUACUUAUUUUUA-------------AUGUCAACGAAUGCCAUUUUAUUCAAAUCG-AAACUGAAUGAG-UACGCGAUUGAGUUGAAUCACA--UU
.((((......))))((((((((((((...-------------........(((((......)))))......-.....)))))))-)))))((((......))))...--.. ( -20.75)
>consensus
ACGAAUUGCGG_______CAAUUGUUUGUUAUGGCCGCUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC____CUCAGCUGAAUCGCAGUUC
..((((((((............................((((((((....)))))))).....((((((((((.....................)))).)))))))))))))) (-14.87 = -16.77 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:28 2006