Locus 464

Sequence ID 2L_DroMel_CAF1
Location 1,357,395 – 1,357,494
Length 99
Max. P 0.635212
window747

overview

Window 7

Location 1,357,395 – 1,357,494
Length 99
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.98
Mean single sequence MFE -21.18
Consensus MFE -16.92
Energy contribution -17.20
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.51
Structure conservation index 0.80
SVM decision value 0.21
SVM RNA-class probability 0.635212
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1357395 99 + 22407834
ACAUAUCCUUCUACUCAUACCGUGUACA---AAAAAUGGUGAAAUAUCAUAAAUGUGGGGCUUUCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG
.................((((((.....---....))))))......((((((((((.((((..((.....))..)))).))).)))))))........... ( -20.50)
>DroSec_CAF1 114532 99 + 1
GCAUAUCCUUCUACUCAUACCGUGUACA---AAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG
.....................((((...---......((((...))))(((((((((.((((..((.....))..)))).))).))))))))))........ ( -20.40)
>DroSim_CAF1 118915 97 + 1
GCAUAUCCUUCUACUCAUACCG--UACA---AAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG
(((((............((((.--....---......))))............((((.((((..((.....))..)))).))))...))))).......... ( -20.20)
>DroEre_CAF1 132941 101 + 1
GGAUAUCCUUCUACCCAUACCGUGUACAUAAAAAAAAGGUAAAAUACCAUAAAUGUGGUGCU-CCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG
((....)).............((((.((((((.....((((...))))....(((..((.(.-.((.....))..)))..)))..)))))).))))...... ( -20.70)
>DroYak_CAF1 117699 101 + 1
-GAUAUCCCUCUACUCAUACCGUGUACAUAAAAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG
-....................((((.((((((.....((((...)))).....((((.((((..((.....))..)))).)))).)))))).))))...... ( -24.10)
>consensus
GCAUAUCCUUCUACUCAUACCGUGUACA___AAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG
.....................((((............((((...))))(((((((((.((((..((.....))..)))).))).))))))))))........ (-16.92 = -17.20 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:49 2006