Locus 4638

Sequence ID 2L_DroMel_CAF1
Location 13,273,158 – 13,273,253
Length 95
Max. P 0.852069
window7325

overview

Window 5

Location 13,273,158 – 13,273,253
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 79.21
Mean single sequence MFE -18.92
Consensus MFE -13.20
Energy contribution -14.13
Covariance contribution 0.93
Combinations/Pair 1.10
Mean z-score -1.68
Structure conservation index 0.70
SVM decision value 0.79
SVM RNA-class probability 0.852069
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13273158 95 + 22407834
CCAUAUCGAAUUGACCUUUAACUAUAUUACUCAUACGACAUUGAGCAUCAUUGUGCAAGUAUCUGUGUGGCCUAUGAGUAAUUCCUAAGUAAACC
....................(((..(((((((((((.((((.((((((....)))).....)).)))).)..)))))))))).....)))..... ( -16.40)
>DroSec_CAF1 7836 95 + 1
CCAUAUCGAAUUGACCUUUAACUAUGUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCAUCUGUGUGGCCCAUGACUAAUUCAUAAGUAAACC
................((((..(((((((.((((..(((((...((((....))))..((....)))))))..)))).)))..))))..)))).. ( -14.70)
>DroSim_CAF1 8064 93 + 1
CCAUAUCGAAUUGACCUUUAACUAUGUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCA-CUGUGUGGCCUAUGAGUAAUUCAUA-GAAAACC
.....................((((((((((((((.(((((((.((((....))))...))-....))))).)))))))))..))))-)...... ( -24.60)
>DroEre_CAF1 7915 84 + 1
CCAUAUCGCAAUGACCUUUAACUAUAUUGCUCAUACGCCAUUGAGCAUCAUUGUGCAAGCCUCUGAGUGGCCUAUGAGUAAUUU-----------
.........................((((((((((.((((((.(((((....)))).......).)))))).))))))))))..----------- ( -20.61)
>DroYak_CAF1 8192 95 + 1
CCAUAUCGAAUUGACCUUUAACUAUAUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCCUAUGAGUGGCCUAUGAGUAAUUCCUAAGUAUACC
....................(((..((((((((((.((((((.(((((....)))).......).)))))).)))))))))).....)))..... ( -21.21)
>DroAna_CAF1 8153 76 + 1
CCAUUUUGGUAUGACCUUUAACUUUAUUACUCAUACG--------CACCAUUGGGCAAGCA--------ACGUAUGAGUAAUAUUCA---AAUCG
.......((.....))........(((((((((((((--------.....(((......))--------))))))))))))))....---..... ( -16.00)
>consensus
CCAUAUCGAAUUGACCUUUAACUAUAUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCAUCUGUGUGGCCUAUGAGUAAUUCAUA_GUAAACC
.........................((((((((((.(((((((.(((....))).)).........))))).))))))))))............. (-13.20 = -14.13 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:15 2006