Locus 4634

Sequence ID 2L_DroMel_CAF1
Location 13,254,536 – 13,254,649
Length 113
Max. P 0.625891
window7319

overview

Window 9

Location 13,254,536 – 13,254,649
Length 113
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -27.47
Consensus MFE -19.01
Energy contribution -19.85
Covariance contribution 0.84
Combinations/Pair 1.37
Mean z-score -1.80
Structure conservation index 0.69
SVM decision value 0.19
SVM RNA-class probability 0.625891
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13254536 113 - 22407834
-----AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUGGGUCGCCGGUUCCAUUCUGAUUUUAUCGCAUGGGCAUUGUUGUUGCUAUUUAGCAUGAAU
-----.......(((((((...(((((((.......(((((((...(((((......))))))))))))((((..((((...)))).))))........)))))))...))))))).. ( -30.30)
>DroSec_CAF1 35978 118 - 1
AUUGUAUAUUUGUCAUGUUCAUUGGCGGUUUCUUAAAAUUGGUCUAGGCCUUUGUUUAGGUCGCCGUUUCCAUUCUGAUUUUAUCGCAUGAGAAUUGUUGUUGCUAUUUAGCAUGAAU
............(((((((...(((((((..((((((...(((....)))....))))))..)))......(((((.((........)).))))).......))))...))))))).. ( -27.40)
>DroSim_CAF1 31968 113 - 1
-----AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUAGGUCGCCGGUUCCAUUCUGAUUUUAUCGCAUGAGAAUUGUUGUUGCUAUUUAGCAUGAAU
-----.......(((((((...(((((((..((((((...(((....)))....))))))..)))((((((((..((((...)))).))).)))))......))))...))))))).. ( -30.30)
>DroEre_CAF1 29333 113 - 1
-----AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUCGGUCGCCGGCUCUUUUCUAAUUUCAUCGUAUAAGCAUUGUUGUUGCUAUUUAGCAUGAAU
-----.......(((((((..(((((((((....((....(((....)))....))..))))))))).......................((((.......))))....))))))).. ( -25.10)
>DroYak_CAF1 29543 113 - 1
-----AUAUUUGUCAUGUUCGUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUCAGGUCGCCAACUAUUCUCUGAUUUUAUCGUAGAAAGAUUGUUGUUGCUAUUUAGCAUGAAU
-----.......(((((((.(((((((((((..((((...(((....)))))))...)))))))))))..((((.((((...)))).))))..................))))))).. ( -30.00)
>DroPer_CAF1 42817 89 - 1
-----AUAUUUGUCAGGUCCAUUGGCAGCUUCUUAAAAUUGGUCUAGGCCUUUGUCUG-GUGAGCGGCUCU-----------------------UUGUUGCUGCUAUUUAGCAUGAAU
-----.....((((((.....))))))(((.............((((((....)))))-)..((((((...-----------------------.....))))))....)))...... ( -21.70)
>consensus
_____AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUAGGUCGCCGGCUCCAUUCUGAUUUUAUCGCAUGAGAAUUGUUGUUGCUAUUUAGCAUGAAU
............(((((((...(((((((.........(((((...(((((......)))))))))).........((((((........))))))...)))))))...))))))).. (-19.01 = -19.85 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:10 2006