Locus 4633

Sequence ID 2L_DroMel_CAF1
Location 13,246,643 – 13,246,750
Length 107
Max. P 0.548866
window7318

overview

Window 8

Location 13,246,643 – 13,246,750
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 88.47
Mean single sequence MFE -34.73
Consensus MFE -28.05
Energy contribution -28.67
Covariance contribution 0.61
Combinations/Pair 1.11
Mean z-score -1.95
Structure conservation index 0.81
SVM decision value 0.03
SVM RNA-class probability 0.548866
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13246643 107 + 22407834
CGAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCAACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC
.(((((((((((.....))))))..((((..........(((.....)))...((((..((((...(((....))).))))...)))).....)))))))))..... ( -32.30)
>DroPse_CAF1 26573 104 + 1
UCGAAAAUGCAUUUACUCUGUCUGUUGCACACG---CUGGCGGCGCUGGCACUCGGAAGUGGCUCAGCGGCCACGCUGCCCACGGCGGCACAAAGCGUGUUCAGCAG
.....................((((((.(((((---(((((..(((((((.(.(....).))).))))))))..((((((...))))))....))))))).)))))) ( -46.50)
>DroSec_CAF1 27918 107 + 1
CCAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC
......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. ( -33.10)
>DroSim_CAF1 23803 107 + 1
CCAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC
......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. ( -33.10)
>DroEre_CAF1 21074 107 + 1
CCAAAAAUGCAAUUGCCUUGCAUCUCGCUCACUAUUUUGGCCGCCCUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUUAGCUC
......((((((.....))))))...(((((((....(((((((..((((.(.(....).))))).)))))))...(((........)))...)))).....))).. ( -30.90)
>DroYak_CAF1 21207 107 + 1
CCAAAAAUGCAAUUGCCUUGCAUCUCGCUCACUAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC
......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. ( -32.50)
>consensus
CCAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC
......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. (-28.05 = -28.67 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:09 2006