Locus 4625

Sequence ID 2L_DroMel_CAF1
Location 13,223,809 – 13,223,929
Length 120
Max. P 0.516822
window7304

overview

Window 4

Location 13,223,809 – 13,223,929
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.92
Mean single sequence MFE -35.32
Consensus MFE -21.82
Energy contribution -23.14
Covariance contribution 1.32
Combinations/Pair 1.16
Mean z-score -2.10
Structure conservation index 0.62
SVM decision value -0.03
SVM RNA-class probability 0.516822
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13223809 120 + 22407834
CCGGCGAAAAGAUUGUUAAGUUCGCCUCGACAGCGGAGGUUCGGGAAAUCGUUCCCGAAUCGGCAUACAAAAAUAGGCAGGGCAAAAGUUUUGCGAAUAAUAUUAAAUCAAGGCUCGGAA
(((((.....((((.....((((((((((....))).((((((((((....)))))))))))))............(((((((....))))))))))).......))))...)).))).. ( -36.80)
>DroSim_CAF1 3368 120 + 1
CCGGUGAAAAGAUUGUAAAGUUCGCCUCCACAGCAGAGGUUCGGGAAAUCGUUCCCGAAGCGGCAUACAAAAAUAGGCAAGGCAAAAGUUUUGCGAAUAACAUUAAAUCGAGGCUCGGAA
((((......((((....)))).(((((....((...(.((((((((....)))))))).).))............(((((((....)))))))...............))))))))).. ( -35.80)
>DroEre_CAF1 941 120 + 1
CCGGAGAAAAGAUUGUUAAGUUCGCCUCCACAGCGGAGGUUCGGGAAAUCGCUCCCGAAGCGGCCUACAAAAAUAGGCACGGCAAAAAUUUUGCAAAUAACAUCAAAUCCAGGCUCGGAA
(((.((....((((((((.....((((((.....))))))((((((......))))))..(((((((......))))).))((((.....))))...)))))....)))....))))).. ( -36.70)
>DroYak_CAF1 371 120 + 1
CCGGUGAAAAGAUUGUUAAAUUCGCCUCCACAGCGGAGGUUCGGGAAAUCGCUCCCGAAGCGGCCUACAAAAAUAGGCACGGCAAAAAUUUUGCGAAUAACAUCAAAUCGAGGCUCGGAA
((((.(....((((((((..(((((((((.....))))))((((((......))))))..(((((((......))))).))((((.....))))))))))))....)))....))))).. ( -37.80)
>DroAna_CAF1 954 120 + 1
UCGGUGAGAAGAUUGUGAAGUUUGCCUCAACGGCAGAAGUGCGGGAAAUUGCUCCCGAGUCGUCCUACAAAGCAAGACAUGGAAAGAAUCUGGCCAACAACAUUAAAACAAGGCUCGGAU
..((..(.....(((((...((((((.....))))))..)))))....)..)).((((((((((...........))).(((..((...))..)))...............))))))).. ( -29.50)
>consensus
CCGGUGAAAAGAUUGUUAAGUUCGCCUCCACAGCGGAGGUUCGGGAAAUCGCUCCCGAAGCGGCCUACAAAAAUAGGCACGGCAAAAAUUUUGCGAAUAACAUUAAAUCAAGGCUCGGAA
((((.(....((((.....(((((((((.......))).(((((((......)))))))((.(((((......)))))...)).........)))))).......))))....))))).. (-21.82 = -23.14 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:55 2006