Locus 4623

Sequence ID 2L_DroMel_CAF1
Location 13,221,729 – 13,221,849
Length 120
Max. P 0.903198
window7302

overview

Window 2

Location 13,221,729 – 13,221,849
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.67
Mean single sequence MFE -40.65
Consensus MFE -23.83
Energy contribution -24.53
Covariance contribution 0.70
Combinations/Pair 1.37
Mean z-score -2.18
Structure conservation index 0.59
SVM decision value 1.03
SVM RNA-class probability 0.903198
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13221729 120 - 22407834
CAAGACGACGGCGCCAACUAUGCGGUGGCUCUUAAUGCCGCCACACUGGCGCUAAUUGAUGCGGGAAUCUGCCUCAAUGAGUUCAUUGUCGCCUGCACCGCCUCACUGAGCAAAUCGAAC
.....(((.(((((((....((.((((((.......)))))).)).)))))))...(((.((((......((..(((((....)))))..)).....)))).))).........)))... ( -44.00)
>DroVir_CAF1 5296 120 - 1
CAGGCGGAUGGCGCCAACUAUGCUGUAUCCCUAAAUGCCGCUACCCUGGCACUCAUUGAUGCGGGCAUAUGCCUAAACGAGUUCGUUGUUGCAUGCACCGCAUCUUUGAGCAAAUCAAAC
..((((.....)))).....(((............(((((......))))).(((..((((((((((..(((...((((....))))...)))))).)))))))..))))))........ ( -41.60)
>DroGri_CAF1 6016 120 - 1
CAGGCGGAUGGUGCCAACUAUGCGGUGUCUCUAAACGCCGCCACACUGGCCCUAAUUGAUGCGGGCAUCUGCCUAAACGAAUUUGUUGUCGCCUGCACCGCAUCGUUGAGUAAAUCCAAC
.....((((((.((((.....(((((((......))))))).....)))))).....((((((((((...((...((((....))))...)).))).))))))).........))))... ( -43.30)
>DroWil_CAF1 5974 120 - 1
CAAGCUGAUGGAGCCAACUAUGCAGUGGCUCUUAAUGCCGCCACAUUGGCUCUGAUCGAUGCUGGUAUUUGCCUUAAUGAAUUCAUUGUGGCUUGCACAGCAUCACUAAGUAAAUCAAAU
...(((((((((((((...(((..(((((.......)))))..)))))))))).)))((((((((((...(((.(((((....))))).))).))).)))))))....)))......... ( -46.90)
>DroMoj_CAF1 5218 120 - 1
CAAGCGGACGGUGCAAACUAUGCUGUUUCUCUAAACGCCGCCACUCUGGCACUUAUCGAUGCGGGCAUAUGUCUAAACGAAUUUGUUGUUGCCUGCACGGCAUCCCUAAGCAAUGCCAAC
..((.((.(((((((.....))).((((....)))))))))).)).(((((.....((.((((((((........((((....))))..))))))))))((........))..))))).. ( -33.00)
>DroAna_CAF1 4514 120 - 1
CAGGCUGACGGAGCUAACUAUGCAGUGGCCCUCAAUGCAGCAACUCUGGCGCUGAUCGAUGCCGGCAUCUGCCUCAACGAACUGAUAGUGGCCUGCACCGCCUCCCUGAGCAAGAAUAAC
((((..(.(((.((..(((((.(((((((..((.((.((((.........)))))).)).)))(((....))).......))))))))).....)).))).)..))))............ ( -35.10)
>consensus
CAAGCGGACGGAGCCAACUAUGCAGUGGCUCUAAAUGCCGCCACACUGGCACUAAUCGAUGCGGGCAUCUGCCUAAACGAAUUCAUUGUCGCCUGCACCGCAUCACUGAGCAAAUCAAAC
...((....(((((((.....((.(((........))).)).....)))))))....((((((((((...((...((((....))))...)).))).))))))).....))......... (-23.83 = -24.53 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:53 2006