Locus 4620

Sequence ID 2L_DroMel_CAF1
Location 13,215,080 – 13,215,200
Length 120
Max. P 0.819635
window7295

overview

Window 5

Location 13,215,080 – 13,215,200
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.75
Mean single sequence MFE -25.50
Consensus MFE -21.61
Energy contribution -22.18
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.93
Structure conservation index 0.85
SVM decision value 0.68
SVM RNA-class probability 0.819635
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13215080 120 + 22407834
CCAGAUUUAGAAAAACAAUAUAAAUUUACUAUCGCGCCACGCCUUAAGCUCGUUUCGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUUCAUCAACUGUUUUUCUAUUUUGGUACUGCCC
(((((..((((((((((.((......)).....(((((..((.....))..(((((...............)))))...)))))............)))))))))).)))))........ ( -24.66)
>DroSec_CAF1 2374 117 + 1
CCAGAUUUAGAAAAACAAUAUAAAUUUACUAUCGCGCCACGCCUUAAGCUCGUUUCGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUC---CAACUGUUUUUCUAUUUUGGUACUGCCC
(((((..((((((((((.((......)).....(((((..((.....))..(((((...............)))))...))))).....---....)))))))))).)))))........ ( -24.66)
>DroEre_CAF1 2657 120 + 1
CCAGAUAUAGAAAAACAAUAUAAAUUUACUAUCCCGCCACGCCUAAAGCUCGUUUAGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUCCAGCAACUGUUUUUCUAUUUUGGUACUGCCC
(((((.(((((((((((.((......))..........(((((.....(((....((((....))))....))).....)))))............))))))))))))))))........ ( -26.70)
>DroYak_CAF1 7243 120 + 1
CCAGAUAUAGAAAAACAAUAUAAAUUUAUUAUCCCGCCACGCCUUAAGCUCGCUUCGAAAAUGUUCUUCCAGGUGCCUCGGCGUAUAUCCGUCAACUGUUUUUCUAUUUUGGUACUGCCC
(((((.((((((((((((((......))))........(((((...((..(((((.(((.......))).))))).)).))))).............)))))))))))))))........ ( -26.00)
>consensus
CCAGAUAUAGAAAAACAAUAUAAAUUUACUAUCCCGCCACGCCUUAAGCUCGUUUCGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUCCAUCAACUGUUUUUCUAUUUUGGUACUGCCC
(((((.(((((((((((.((......))..........(((((.....(((.....(((....))).....))).....)))))............))))))))))))))))........ (-21.61 = -22.18 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:46 2006