| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,350,840 – 1,350,931 |
| Length | 91 |
| Max. P | 0.685032 |
| Location | 1,350,840 – 1,350,931 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.25 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -21.12 |
| Energy contribution | -22.00 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.685032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1350840 91 + 22407834 CC-GGAGUUGGCUGAAAGUUGCAAGUUGGCAUCUGCAACUAGGCAAACAUAUUGCAUGUCUACACCCUUGUAGACACCGACAGACACACACA--- .(-((.(((.(((...(((((((..(....)..))))))).))).)))........((((((((....))))))))))).............--- ( -26.90) >DroSec_CAF1 107349 91 + 1 CA-GGAGUUGGCUGAAAGUUGCAAGUUGGCAUCUGCAACUAGGCAAACAUAUUGCAUGUCUACACCCUUGUAGACACCGACAGACACAUACA--- ..-...(((((.....(((((((..(....)..)))))))..((((.....)))).((((((((....)))))))))))))...........--- ( -25.70) >DroSim_CAF1 112365 91 + 1 CA-GGAGUUGGCUGAAAGUUGCAAGUUGGCAUCUGCAGCUAGGCAAACAUAUUGCAUGUCUACACCCUUGUAGACACCGACAGACACACACA--- ..-((..(((((((..((.(((......))).)).)))))))((((.....)))).((((((((....))))))))))..............--- ( -25.80) >DroAna_CAF1 133572 95 + 1 CCUGAAGUUGGAUGAAAGUUGCAAGUUGGCAUCUGCAUCUGGGCAAACAUAUUGCAUGUCUACAUCCUUGUCGACCCACACACUCUCACAUAGUC ..((((((((((((..((.(((......))).)).))))(((((((.....))))..(((.(((....))).)))))))).))).)))....... ( -18.70) >consensus CA_GGAGUUGGCUGAAAGUUGCAAGUUGGCAUCUGCAACUAGGCAAACAUAUUGCAUGUCUACACCCUUGUAGACACCGACAGACACACACA___ ......(((((.....(((((((..(....)..)))))))..((((.....))))..(((((((....))))))).))))).............. (-21.12 = -22.00 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:46 2006