Locus 4615

Sequence ID 2L_DroMel_CAF1
Location 13,195,392 – 13,195,484
Length 92
Max. P 0.686889
window7288

overview

Window 8

Location 13,195,392 – 13,195,484
Length 92
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 71.01
Mean single sequence MFE -14.51
Consensus MFE -8.20
Energy contribution -8.57
Covariance contribution 0.38
Combinations/Pair 1.30
Mean z-score -1.62
Structure conservation index 0.56
SVM decision value 0.32
SVM RNA-class probability 0.686889
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13195392 92 - 22407834
ACUGGUGGCACAAUGGUUACCAACCAGAGUGUCAAACUAAAUGCAAACGAAACCAAAAAGC--------AGAA-CAGAAAAAAACUUACAUUAUAGAAACU
.(((.((((((..((((.....))))..)))))).......(((...............))--------)...-)))........................ ( -16.06)
>DroGri_CAF1 2109 86 - 1
GCUGAUGGCAU----UUUAGCUAUUAAACUGUUAA--------CCAACAAAU--UAUAAU-GUGUGAAGAGAUCGAACAGAAAACUUACAUUAUAGAAACU
..(((((((..----....)))))))...((((..--------..))))..(--((((((-(((...((...((.....))...))))))))))))..... ( -13.10)
>DroSec_CAF1 2326 81 - 1
ACUGGUGGCGCACUGGUUACCAACCAGAGUGUCAA-----------ACGAAACCAAAAAGC--------AGAA-CAGAAAAAAACUUACAUUAUAGAAACU
.(((.((((((.(((((.....))))).)))))).-----------..(....).......--------....-)))........................ ( -15.40)
>DroSim_CAF1 2324 81 - 1
ACUGGUGGCGCAAUGGUUACCAGCCAGAGUGUCAG-----------ACGAAACCAAAAAGC--------AGAA-CAGAAAAAAACUUACAUUAUAGAAACU
.(((.((((((..((((.....))))..)))))).-----------..(....).......--------....-)))........................ ( -13.50)
>consensus
ACUGGUGGCACAAUGGUUACCAACCAGAGUGUCAA___________ACGAAACCAAAAAGC________AGAA_CAGAAAAAAACUUACAUUAUAGAAACU
.....((((((..((((.....))))..))))))................................................................... ( -8.20 =  -8.57 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:39 2006