Locus 4603

Sequence ID 2L_DroMel_CAF1
Location 13,181,587 – 13,181,680
Length 93
Max. P 0.556677
window7261

overview

Window 1

Location 13,181,587 – 13,181,680
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 84.30
Mean single sequence MFE -36.63
Consensus MFE -26.77
Energy contribution -27.97
Covariance contribution 1.20
Combinations/Pair 1.27
Mean z-score -1.92
Structure conservation index 0.73
SVM decision value 0.05
SVM RNA-class probability 0.556677
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13181587 93 + 22407834
ACAGCUGCCGCCUAAAGUGACUGUAGGCCAUUGAGCUGGUGCAGUUGCUCUCGGAGGAGCAGCGUAGUAGCGUAUAGCUCGUUUGGCUGCCCA
...((.((((((((.((...)).)))))....((((((.(((.((((((((....))))))))((....)))))))))))....))).))... ( -36.00)
>DroSec_CAF1 2118 93 + 1
ACAGCUGCCGUCUGAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGCUCUCGGAGGAGCAGCGAAGUAGUGUGUAGCUCGUUUGGCUGCCCA
...((((((.(((((((..(((((((((......))..)))))))..)).))))).).))))).......((.((((((.....)))))).)) ( -39.80)
>DroSim_CAF1 2108 93 + 1
ACAGCUGCCGUCUGAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGCUCUCGGAGGAGCAGCGAAGUAGUGUGUAGCUCGUUUGGCUGCCCA
...((((((.(((((((..(((((((((......))..)))))))..)).))))).).))))).......((.((((((.....)))))).)) ( -39.80)
>DroEre_CAF1 2136 93 + 1
ACAGCUGCCUCCUAAAGUGACUGUAGGCUAUUGAGCUGCUGCAGUUGCUCUCGGAAGAGCAACGCAGUAGCGUGUAGCUCGUUUGGCUGCCCA
.(((..((((.(..........).))))..))).((((((((.((((((((....))))))))))))))))(.((((((.....)))))).). ( -40.50)
>DroYak_CAF1 2170 93 + 1
ACAGCUGCCUUCUAAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGGUCUCGGACGAGCAGCGGAGUAGCGUGUAGCUCGUUUGGCUGCCCA
((((..((........))..)))).(((((.((((((((.((.(((.(((...))).))).((......))))))))))))..)))))..... ( -32.30)
>DroPer_CAF1 2428 93 + 1
AGAGCUGCCGCCGAAAGUGUGCAUAGGCCGCAGCACUGCUGCAGUUGCCAGCCGAUGUGCAGCGGAACAGAACAUAGCUCGCCUUGCCCCCAA
.(((((((((((....)((..(((.(((.(((((.........)))))..))).)))..)))))).........))))))............. ( -31.40)
>consensus
ACAGCUGCCGCCUAAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGCUCUCGGAGGAGCAGCGAAGUAGCGUGUAGCUCGUUUGGCUGCCCA
((((..((........))..)))).(((((.(((((((((((.((((((((....))))))))...)))))....))))))..)))))..... (-26.77 = -27.97 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:14 2006