| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,176,733 – 13,176,826 |
| Length | 93 |
| Max. P | 0.600475 |
| Location | 13,176,733 – 13,176,826 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.42 |
| Mean single sequence MFE | -31.48 |
| Consensus MFE | -20.11 |
| Energy contribution | -20.58 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13176733 93 - 22407834 GA-----UUUAGCGGGCAAAAUAAUGCCAAAACGCUGUUG---UGCGA-CUGUGUAGCCCUGGCGUAUAAUUGCCAUCCCUGCUC--GCGCAAAUGCGAAAGAA ..-----.......((((......))))....(((..(((---(((((-....((((...(((((......)))))...))))))--))))))..)))...... ( -30.80) >DroPse_CAF1 47958 95 - 1 CGUUUCGUUUUGCGCGAAAAAUAAUGCCAAAAUGCUAUCGACUAGCGUCCAGUGCAACCCUGGAAGGUAAUUGCCAGCCCUGCUCUGGCGCAAAU--------- ((...(((((((.(((........))))))))))....))....(((.((((.(((...((((((.....)).))))...))).)))))))....--------- ( -28.00) >DroSec_CAF1 25546 94 - 1 GA-----UUUAGCGGGCAAAAUAAUGCCAAAACGCUGUGG---UGCGA-CUGUGUAGCCCUGGCUCUUAAUUGCCAUCCCUGCAC-GGCGCAAAUGCGAAAGAA ..-----..(((((((((......))))....)))))...---((((.-((((((((...((((........))))...))))))-))))))....(....).. ( -34.10) >DroSim_CAF1 17894 94 - 1 GA-----UUUAGCGGGCAAAAUAAUGCCAAAACGCUGUGG---UGCGA-CUGUGUAGCCCUGGCUCUUAAUUGCCAUCCCUGCUC-GGCGCAAAUGCGAAAGAA ..-----..(((((((((......))))....)))))...---((((.-(((.((((...((((........))))...)))).)-))))))....(....).. ( -30.10) >DroEre_CAF1 18031 94 - 1 AA-----UUUAGCGGGCAAAAGAAUGCCAAAACGCUGUUG---UGCGA-CUGUGCAGCCCUGGCACUUAAUUGCCAUCCCUGCUC-GGCGCAAAUGCAAAAGAA ..-----...((((((((......))))....))))((..---((((.-(((.((((...(((((......)))))...)))).)-))))))...))....... ( -32.60) >DroYak_CAF1 26044 94 - 1 GA-----UUUAGCGGGCAAAAGAAUGCCAAAACGCUGUUU---UGCGA-CUGUGCAGCCCUGGCACUUAAUUGCCAUCCCUGCUC-GGCGCAAAUGCAAAAGAA ..-----..(((((((((......))))....))))).((---((((.-(((.((((...(((((......)))))...)))).)-)))))))).......... ( -33.30) >consensus GA_____UUUAGCGGGCAAAAUAAUGCCAAAACGCUGUUG___UGCGA_CUGUGCAGCCCUGGCACUUAAUUGCCAUCCCUGCUC_GGCGCAAAUGCGAAAGAA .........(((((((((......))))....)))))......((((....(.((((...((((........))))...)))).)...))))............ (-20.11 = -20.58 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:13 2006