| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,173,869 – 13,173,974 |
| Length | 105 |
| Max. P | 0.518576 |
| Location | 13,173,869 – 13,173,974 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -25.06 |
| Consensus MFE | -19.43 |
| Energy contribution | -19.18 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13173869 105 - 22407834 CACUUAA---------ACGAUUCGUUUUUUCUUCUUCUACAGCUGUCUGUAAACGUUGUGGCGCCAUUGGAGUGAAGCACACAUUCUACACAAAAUCGCGACGUUUUUGCAGCA .....((---------(((...)))))..............(((((....(((((((((((......(((((((.......))))))).......)))))))))))..))))). ( -25.62) >DroPse_CAF1 44860 99 - 1 UACUUA----------AUAAUU-----GUCUUUCUUCUCCAGCUGUCUGUGAACGUUGCGGUGCCAUUGGCGUGAAGCACACAUUUUAUACAAAAUCUCGACGCUUCUGCAGCA ......----------......-----..............(((((....((((((((.((((((...)))(((.....)))............))).))))).))).))))). ( -21.00) >DroGri_CAF1 46664 107 - 1 UAAUUGAUUCU----UGUAACU---AUUAUCUGCUCCUGCAGCUGUCUGUGAGCGUUGUGGUGCCAUCGGUGUGAAGCACACAUUCUACACGAAAUCGCGUCGUUUCUGCAGCA ...........----.......---......(((....)))(((((..(.(((((.((((((....((((((.(((.......)))))).))).)))))).)))))).))))). ( -24.50) >DroEre_CAF1 15167 100 - 1 UAUUU-A---------ACGAUUC----UCUUUUCUUCCACAGCUGUCUGUAAACGUUGCGGAGCCAUUGGAGUGAAGCACACAUUCUACACAAAAUCGCGGCGUUUUUGCAGCA .....-.---------.......----..............(((((....(((((((((((......(((((((.......))))))).......)))))))))))..))))). ( -26.52) >DroYak_CAF1 23102 104 - 1 UAAUUAA---------ACGAAUCCA-UUUUUUUCUUCUACAGCCGUCUGUAAACGUUGCGGAGCCAUUGGAGUGAAGCACACAUUCUACACAAAAUCGCGACGUUUUUGCAGCA .......---------.........-..................(.(((((((((((((((......(((((((.......))))))).......)))))))))..))))))). ( -23.32) >DroMoj_CAF1 60368 110 - 1 UAAUUAAUCCUAUCCAAUGAUA---AUGCUCUGCUUC-GCAGCUGUCUGUGAACGUUGCGGUGCCAUUGGUGUGAAGCACACGUUCUACACAAAGUCGCGACGUUUCUGCAGCA ..........((((....))))---.(((...((.((-((.(((...((((((((((((.(..((...))..)...))).)))))).)))...))).)))).))....)))... ( -29.40) >consensus UAAUUAA_________ACGAUU____UUUUCUUCUUCUACAGCUGUCUGUAAACGUUGCGGUGCCAUUGGAGUGAAGCACACAUUCUACACAAAAUCGCGACGUUUCUGCAGCA .........................................(((((....(((((((((((..((...)).(((.((........)).)))....)))))))))))..))))). (-19.43 = -19.18 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:11 2006