| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,349,652 – 1,349,742 |
| Length | 90 |
| Max. P | 0.649973 |
| Location | 1,349,652 – 1,349,742 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 83.19 |
| Mean single sequence MFE | -24.68 |
| Consensus MFE | -18.17 |
| Energy contribution | -18.42 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1349652 90 - 22407834 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUUACACGUAUGCCCUAGUGGUGACAACGUGACUUAAGGC--CGU-AUUAUUAACUACAUG-- ........((((((((((....)))))).))))...(((((.(((((....)).).))))))).........--.((-(........)))...-- ( -21.50) >DroSec_CAF1 106146 91 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUUACACGUAUGCCCUAGUGGUGAAAACGUGAUUUAAGGC--GGU-AUUAUUAACUAUAUGU- ......((((((((((((....))))))........(((((...(((....)).)...)))))......)))--)))-................- ( -22.50) >DroSim_CAF1 110830 91 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUUACACGUAUGCCCUAGUGGUGACAGCGUGACUUAAGGC--AGU-AUAAUUAACUAUAUGU- ......((((((((((((....))))))........(((((.(((((....)).).)))))))......)))--)))-................- ( -23.70) >DroEre_CAF1 122892 77 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUAACACGUAUGCCCUAGUGGUGACAACGUGACUUAGG-----GU-AUUA---A--------- ........((((((((((....)))))).))))........((((((((..(((.((...)).)))))))-----))-))..---.--------- ( -24.60) >DroYak_CAF1 109918 92 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUAACACGUAUGCCCUAGUGGUGGCAACGUGACUUUAGUUCUAGU-AUUAUUAACCAU-UGU- .((((((.((((((((((....)))))).))))...(((((.(((((.....).)))))))))..))))))......-............-...- ( -27.80) >DroAna_CAF1 132766 85 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAAAACACGUAUGUGCUAGUGGUGACACCAUGAU----GGU--CGUGAUUAGUA----UAUUUC .......(((((((((((....)))))).))))).......(((((((((((....)))((((..----...--))))..)))))----)))... ( -28.00) >consensus CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUAACACGUAUGCCCUAGUGGUGACAACGUGACUUAAGGC__AGU_AUUAUUAACUAUAUGU_ ........((((((((((....)))))).))))...(((((...(((....)).)...)))))................................ (-18.17 = -18.42 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:43 2006