Locus 4597

Sequence ID 2L_DroMel_CAF1
Location 13,162,989 – 13,163,088
Length 99
Max. P 0.559715
window7253

overview

Window 3

Location 13,162,989 – 13,163,088
Length 99
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 82.95
Mean single sequence MFE -32.46
Consensus MFE -18.48
Energy contribution -17.48
Covariance contribution -1.00
Combinations/Pair 1.23
Mean z-score -2.02
Structure conservation index 0.57
SVM decision value 0.05
SVM RNA-class probability 0.559715
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13162989 99 - 22407834
----UUCAUCAGCGGAUGUCGUUUCGUCUGAUUGACCACCAUCUGUCUUGGUCAAAUUCAUAGGCGACCCUUUGGGCUUUGGCAUGAC-----UUGUGAUGAAUUCAA
----(((((((.((((((......))))))..............(((...((((((((((.(((....))).)))).))))))..)))-----...)))))))..... ( -27.00)
>DroSec_CAF1 11726 104 - 1
----GUCAUCAGUGGAUGUCGUUUCUUCUGAUGGACCACCAUCUGACUUGGUUAAAUUCAUAGGCGACUCUUUGGGCUUUGGCAUGAUGGCUUUGGUGAUGAAUUCAA
----.((((((.(..(.((((((...((.(((((....))))).))....((((((((((.((....))...)))).))))))..)))))))..).))))))...... ( -27.00)
>DroSim_CAF1 4102 99 - 1
----GUCAUCAGUGGAUGUCGUUUCUUCUGAUGGACCACCAUCUGACUUGGUCAAAUUCAUAGGCGACUCUUUGGGCUUUGGCAUGAC-----UGGUGAUGAAUUCAA
----((((((((((((.(((((((.....(((((....)))))((((...)))).......))))))))))....((....))...))-----)))))))........ ( -28.10)
>DroEre_CAF1 4118 103 - 1
GAAGGUCAUCAGUGGAUGUCGUUUCGUCUGAUUGACCACCAUCUGACUUGGUCAAAUCCAGAGGCGACUCUUUGGAAAUUGGCUUGGU-----GGUCAAUGUGGACAA
(((((.((((....)))).).))))((((((((((((((((........((((((.((((((((....))))))))..))))))))))-----))))))).))))).. ( -41.00)
>DroYak_CAF1 12011 103 - 1
GAAAGUCAUCAGUGGAUGUCGAUUCGUCUGAUUGACCACCGUCUGACUUGGUCAAAUCCAGAGGCGACUCUUUGGAAUUUGGCUUGGU-----GGUCGAUGAAUUCAG
(((..(((((...(((((......)))))....((((((((........(((((((((((((((....))))))).))))))))))))-----))))))))).))).. ( -39.20)
>consensus
____GUCAUCAGUGGAUGUCGUUUCGUCUGAUUGACCACCAUCUGACUUGGUCAAAUUCAUAGGCGACUCUUUGGGCUUUGGCAUGAU_____UGGUGAUGAAUUCAA
.....(((((((((((((..(..(((......))).)..)))))).))..((((((((((.(((....))).)))).))))))..............)))))...... (-18.48 = -17.48 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:06 2006