| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,151,071 – 13,151,174 |
| Length | 103 |
| Max. P | 0.714303 |
| Location | 13,151,071 – 13,151,174 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 83.26 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -24.15 |
| Energy contribution | -24.73 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13151071 103 + 22407834 -UUUCAAGAACGC-UCGGAAACGGAUGCGGAUACGGAUG------CGGAUGUCUGCCAUAAACGAGCU--CAUUAGUAGGCACAAUGUGCCGUGGCUAAUGUGCUCCAAUAGA---- -.........(((-(((....)))..))).........(------(((....)))).......((((.--(((((((.(((((...)))))...))))))).)))).......---- ( -35.60) >DroPse_CAF1 15661 104 + 1 AUUUUUACAACGC-UCGGAAACGGAUGCGGAUACGGAUG------CGGAUGUCUACCAUAAACGAGCU--CAUUAGUAGGCACAAUGUGCCGUGGCUAAUGUGCUUCAGAGCA---- ...........((-(((((..((.((.((....)).)).------))....))).........((((.--(((((((.(((((...)))))...))))))).))))..)))).---- ( -36.50) >DroSec_CAF1 82 103 + 1 -UGCCAACAACGC-UCGGAAACGGAUGCGGAUACGGAUG------CGGAUGUCUGCCAUAAACGAGCU--CAUUAGUAGGCACAAUGUGCCGUGGCUAAUGUGCUCCAAUAGA---- -..((.....(((-(((....)))..))).....))..(------(((....)))).......((((.--(((((((.(((((...)))))...))))))).)))).......---- ( -37.00) >DroWil_CAF1 48487 94 + 1 ------CUAACGCCCCGGAAAC-----------CGGAUG------CGGAUGUCUACCAUAAACGAGCUCUCAUUAGUAGGCACAAUGUGGCUUGGCUAAUGUGCUUGAGAAUUUCAU ------....(((.((((...)-----------)))..)------))...............(((((...(((((((((((........)))).))))))).))))).......... ( -26.30) >DroYak_CAF1 61 109 + 1 -UUUCAACAACGC-UCGGAAACGGAUGCGGAUACGGAUGCGGAUGCGGAUGUCUGCCAUAAACGAGCU--CAUUAGUAGGCACAAUGUGCCAUGGCUAAUGUGCUCCAAUAGA---- -.........(((-(((....)))..))).........((((((......)))))).......((((.--(((((((.(((((...)))))...))))))).)))).......---- ( -37.10) >DroPer_CAF1 15861 104 + 1 AUUUUUACAACGC-UCGGAAACGGAUGCGGAUACGGAUG------CGGAUGUCUACCAUAAACGAGCU--CAUUAGUAGGCACAAUGUGCCGUGGCUAAUGUGCUUCAGAGCA---- ...........((-(((((..((.((.((....)).)).------))....))).........((((.--(((((((.(((((...)))))...))))))).))))..)))).---- ( -36.50) >consensus _UUUCAACAACGC_UCGGAAACGGAUGCGGAUACGGAUG______CGGAUGUCUACCAUAAACGAGCU__CAUUAGUAGGCACAAUGUGCCGUGGCUAAUGUGCUCCAAAAGA____ ..........(((..((....))...))).................((.......))......((((...(((((((.(((((...)))))...))))))).))))........... (-24.15 = -24.73 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:01 2006