Locus 4592

Sequence ID 2L_DroMel_CAF1
Location 13,149,566 – 13,149,675
Length 109
Max. P 0.558904
window7247

overview

Window 7

Location 13,149,566 – 13,149,675
Length 109
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 73.28
Mean single sequence MFE -22.93
Consensus MFE -11.84
Energy contribution -13.78
Covariance contribution 1.94
Combinations/Pair 1.09
Mean z-score -1.83
Structure conservation index 0.52
SVM decision value 0.05
SVM RNA-class probability 0.558904
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13149566 109 + 22407834
CCCGAAGAAUGGUCAUCCAAUUUGGGUAUCGGUCACGCGGGCAAUUUCUACCUGGCCAAAAAAUAUUUAUUUGUAUUUGUAUAUGGCUGUUU---CUUUUUUGCAGACCUUC
((((((...(((....))).))))))....((((..((((..........)).(((((..((((((......)))))).....)))))....---.......)).))))... ( -25.80)
>DroPse_CAF1 14330 95 + 1
CCCGAAGAAUGGUCAUCGAAUUUGUGUAUUGGUCACGCUGACAAUUUCUACCUGGCCGCAAAAUAUUU----------GUAUAA----UUUU---UUAUUUUGCAGACCUUC
......(((.((((................(((((.(..((.....))..).)))))((((((((...----------......----....---.)))))))).))))))) ( -20.54)
>DroGri_CAF1 21514 91 + 1
UCCGAAGAAUGGUCAAAG------CACGAUGGCCACUACCUCAAUUUCUACCUGGCCACAGAA-AU-----AA-----AAAUAA----UUUUUGUUUAUUGUGCAGACCUUC
......(((.((((...(------(((((((((((.................)))))((((((-((-----..-----.....)----)))))))..))))))).))))))) ( -24.83)
>DroPer_CAF1 14544 95 + 1
CCCGAAGAAUGGUCAUCGAAUUUGUGUAUUGGUCACGCUGACAAUUUCUACCUGGCCGCAAAAUAUUU----------GUAUAA----UUUU---UUAUUUUGCAGACCUUC
......(((.((((................(((((.(..((.....))..).)))))((((((((...----------......----....---.)))))))).))))))) ( -20.54)
>consensus
CCCGAAGAAUGGUCAUCGAAUUUGUGUAUUGGUCACGCUGACAAUUUCUACCUGGCCACAAAAUAUUU__________GUAUAA____UUUU___UUAUUUUGCAGACCUUC
......(((.((((................(((((.(..((.....))..).)))))((((((((...............................)))))))).))))))) (-11.84 = -13.78 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:00 2006