Locus 4591

Sequence ID 2L_DroMel_CAF1
Location 13,145,905 – 13,146,018
Length 113
Max. P 0.882119
window7246

overview

Window 6

Location 13,145,905 – 13,146,018
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.42
Mean single sequence MFE -28.13
Consensus MFE -26.24
Energy contribution -26.55
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -1.70
Structure conservation index 0.93
SVM decision value 0.92
SVM RNA-class probability 0.882119
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13145905 113 - 22407834
AG----UAGCAGGUGC---CAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAAAGAUCAAAUCGAUUUGUGGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA
..----..((((((..---...))))))..((((..((.(((((..((((((..(((((.....)))))...))))..))...)))))((((((.....)))))).....))..)))).. ( -29.60)
>DroSim_CAF1 13854 120 - 1
AGUAAGUAGCAGGUGCCACCAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAAAGAUCAAAUCGAUUUGUGGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA
........((((((........))))))..((((..((.(((((..((((((..(((((.....)))))...))))..))...)))))((((((.....)))))).....))..)))).. ( -29.60)
>DroEre_CAF1 15017 112 - 1
AA----UAGCAGGUGC---CGUGCCUGCGAAUAAGCCAAGACUAGUAGUCGCAAAGAUCAAAUCGAU-UGUGGUGGGCCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA
..----..((((((..---...))))))......((((.(((.....))).....((((.....)))-).)))).((((.....))))((((((.....))))))............... ( -27.10)
>DroYak_CAF1 13353 113 - 1
AC----CAACAGGUGC---CAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAGAGAUCAAAUCGAUUUGUUGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA
..----...(((((..---...)))))...((((..((.(((((..(((((((((((((.....))))).))))))..))...)))))((((((.....)))))).....))..)))).. ( -26.20)
>consensus
AG____UAGCAGGUGC___CAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAAAGAUCAAAUCGAUUUGUGGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA
........((((((........))))))..((((..((.(((((..((((((..(((((.....)))))...))))..))...)))))((((((.....)))))).....))..)))).. (-26.24 = -26.55 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:59 2006