| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,140,578 – 13,140,684 |
| Length | 106 |
| Max. P | 0.866346 |
| Location | 13,140,578 – 13,140,684 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.91 |
| Mean single sequence MFE | -24.69 |
| Consensus MFE | -15.22 |
| Energy contribution | -16.75 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13140578 106 + 22407834 --GACUUAUUUUUUGUUAUCAGCAAAGUAUUUGGCACA-GAGCCA-GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCGAGUAAACAAAAGUCUGAUA---------- --(((((.....(((((((..((........((((...-..))))-(..(((((((.(((.........))).)))))))..).....))..)).)))))))))).....---------- ( -23.00) >DroSec_CAF1 7693 89 + 1 -------------UAUUAUCAGCAAAGUAUUUGGCACA--------GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAACCGAGUAAACAAAAGGCUGAUA---------- -------------...(((((((....(((((((....--------(..(((((((.(((.........))).)))))))..).....)))))))........)))))))---------- ( -23.40) >DroSim_CAF1 8488 96 + 1 -------------UAUUAUCAGCAAAGUAUUUGGCACA-CUGCCAUGUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCGAGUAAACAAAAGGCUGAUA---------- -------------...(((((((...((((.((((...-..)))).))))..........((((((......(((((...)))))...)))))).........)))))))---------- ( -25.40) >DroEre_CAF1 9764 108 + 1 UCGCCUCCACUUUUGUUAUCAGUAAAGUAUUUGGCACA-CAGCCA-GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCAAGUAAACAAAAGGCUGAUA---------- ..((((.....(((((((((...........((((...-..))))-(..(((((((.(((.........))).)))))))..)))).))))))........)))).....---------- ( -24.52) >DroYak_CAF1 7722 106 + 1 --GCCUCCACUUUUGUUAUCAGCAAAGUAUUUGGCACA-GAGCCA-GUAUAUCUCGUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCAAGUAAACAAAAGGCUGAUA---------- --((((.....((((((((..((...(((((.(((...-..))))-))))((((((((.....))).)))))(((((...)))))...))..)).)))))))))).....---------- ( -25.00) >DroAna_CAF1 8012 115 + 1 GUGUUUUCACUUUUGUUAUCUGCGAAAUAUUUGUCACAAGCGCCG-CGAUAUCUUAUAUCAUUUGCAGAGAUUUCAGAUAUCAGAUAGCC----AAACAAAAGGCUAAGCACAAAACUGG ((((((...((((((((.((((((((.............((...)-)(((((...))))).))))))))(((.......)))........----.))))))))...))))))........ ( -26.80) >consensus __G_CU_CACUUUUGUUAUCAGCAAAGUAUUUGGCACA_GAGCCA_GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCGAGUAAACAAAAGGCUGAUA__________ ................(((((((...((((.((((......)))).))))((((((.(((.........))).))))))........................))))))).......... (-15.22 = -16.75 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:48 2006