| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,129,672 – 13,129,828 |
| Length | 156 |
| Max. P | 0.879917 |
| Location | 13,129,672 – 13,129,788 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 93.79 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -19.63 |
| Energy contribution | -19.91 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13129672 116 - 22407834 AUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGUCGAACAAAACUGCAGAAAAACAUAAAAAAGAAGCCAGGAAGAGGUGCUUUUUAAGCUAAAGCCAUUAUAU ....((.......))......((((((..((..(((((....)))))..))...................((((((..(((.......))).))))))........)))))).... ( -24.60) >DroSec_CAF1 22569 116 - 1 AUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGCAGAAAAACAUAAAAAAGAAGCCAGGCAGAGGUGAUUUUUCAGUUAAAGCCAUUAAAU ....((.......))......((((((..((..(.(((....))).)..))..(((((............(((((...(((.......)))..))))))))))...)))))).... ( -23.30) >DroSim_CAF1 23691 116 - 1 AUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGCAGAAAAACAUAAAAAAGAAGCCAGGCAGAGGUGUUUUUUCAGUUAAAGCCAUUAUAU ....((.......))......((((((..((..(.(((....))).)..))..(((((..(((((((((....................))))))))))))))...)))))).... ( -26.05) >DroEre_CAF1 24562 114 - 1 AUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGCAGAAA-ACAUAAAAAAUAAGCCAGGGAGAGGUGUUUCU-CAGUUAAAGCCAUUGCAU ....((......(.....)..((((((..((..(.(((....))).)..))..(((((.(((((-.............(((.......))).)))))-)))))...)))))))).. ( -26.74) >DroYak_CAF1 23429 113 - 1 AUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGCAGAAAAACAUA-AAAAUAAGCCAGGGAGAGGUGGUUUU-C-GUUAAAGCUAUUAUAU ...(((.(((((((...((....((((..((..(.(((....))).)..)).....((........))..-.......)))).......))...)))-)-)))...)))....... ( -22.00) >consensus AUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGCAGAAAAACAUAAAAAAGAAGCCAGGCAGAGGUGUUUUUUCAGUUAAAGCCAUUAUAU ....((.......))......((((((..((..(.(((....))).)..))..(((((.((((...............(((.......)))..)))).)))))...)))))).... (-19.63 = -19.91 + 0.28)
| Location | 13,129,712 – 13,129,828 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.69 |
| Mean single sequence MFE | -29.68 |
| Consensus MFE | -22.09 |
| Energy contribution | -23.15 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.879917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13129712 116 - 22407834 AGUUGCCGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCAAAUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGUCGAACAAAACUGC----AGAAAAACAUAAAAAAG .((..(((((((....).))))...(((.((..((.((......))))..)))))......))..))..((..(((((....)))))..))........----................. ( -29.90) >DroEre_CAF1 24601 115 - 1 AGUUCCAGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCAAAUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGC----AGAAA-ACAUAAAAAAU ..............((((((.....((((((.....((......))......(.....)..))))))..((..(.(((....))).)..))....))))----))...-........... ( -27.10) >DroYak_CAF1 23467 115 - 1 AGUUGCCGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCAAAUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGC----AGAAAAACAUA-AAAAU .((((((((((((.((((.(....)(((.((..((.((......))))..)))))..........)))).))))))((....))))).)))........----...........-..... ( -29.20) >DroAna_CAF1 29549 111 - 1 GGU---AGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCGAAUCAGCAAACGAGGCA-ACAAGGUGGCCAGUGAGGCGUGAAAACUGCCAACAAAAAUGCUUCCAGAAG-UCACCAA---- .((---.(((((..((((.((..((((.........)))).)).))))..))))).-))..((((((....(((((((.................))))))).....)-)))))..---- ( -32.53) >consensus AGUUGCAGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCAAAUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGC____AGAAA_ACAUAAAAAAU .(((....(((.....((((.....((((((.....((......))......(.....)..))))))..((..(.(((....))).)..))....))))....)))..)))......... (-22.09 = -23.15 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:44 2006