Locus 458

Sequence ID 2L_DroMel_CAF1
Location 1,341,399 – 1,341,519
Length 120
Max. P 0.937771
window738

overview

Window 8

Location 1,341,399 – 1,341,519
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -30.13
Consensus MFE -28.49
Energy contribution -28.60
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.31
Structure conservation index 0.95
SVM decision value 1.26
SVM RNA-class probability 0.937771
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1341399 120 - 22407834
ACGAUAUCAUUGUGGAAAAGCUUCCUAUAAGUCAUGUUAAUACGCAAGUAACAAAAGUUCUUCCAGUUCCCCAUGGGGACUAUCUAUUUCACUCGAACUGGUAUGCCUACGAUAUUAACC
..((((((.((((((((....))))...............(((....)))))))..((....(((((((((....)))).........((....)))))))...))....)))))).... ( -25.00)
>DroSec_CAF1 98776 120 - 1
ACGAUAUCAUUGUGGAAAAGGUUUCUAUAAGUCAUCUUAAUACGCAAGUAACAGACGUUCUUCCAGUUCCCCAUGGGGACUACCUAUUUCACUCGAACUGGUAUGCCUACGAUAUCAUCC
..((((((...((((((.((((.(((.((((....)))).(((....)))..))).........(((((((...))))))))))).)))))).......((....))...)))))).... ( -32.70)
>DroSim_CAF1 102733 120 - 1
ACGAUAUCAUUGUGGAAAAGGUUUCUAUAAGUCAUCUUAAUACGCAAGUAACAGACGUUCUUCCAGUUCCCCAUGGGGACUACCUAUUUCACUCGAACUGGUAUGCCUACGAUAUCAAGC
..((((((...((((((.((((.(((.((((....)))).(((....)))..))).........(((((((...))))))))))).)))))).......((....))...)))))).... ( -32.70)
>consensus
ACGAUAUCAUUGUGGAAAAGGUUUCUAUAAGUCAUCUUAAUACGCAAGUAACAGACGUUCUUCCAGUUCCCCAUGGGGACUACCUAUUUCACUCGAACUGGUAUGCCUACGAUAUCAACC
..((((((...((((((.((((..................(((....)))..............(((((((...))))))))))).)))))).......((....))...)))))).... (-28.49 = -28.60 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:40 2006