Locus 4576

Sequence ID 2L_DroMel_CAF1
Location 13,123,893 – 13,124,004
Length 111
Max. P 0.940317
window7213

overview

Window 3

Location 13,123,893 – 13,124,004
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 86.72
Mean single sequence MFE -34.50
Consensus MFE -26.66
Energy contribution -25.86
Covariance contribution -0.80
Combinations/Pair 1.28
Mean z-score -2.25
Structure conservation index 0.77
SVM decision value 1.31
SVM RNA-class probability 0.940317
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13123893 111 - 22407834
UUGUCUGGCACUCUAUUUUCCUCUUUUUGGGGUAUGGAAACUUACCCAUCAAGGAUGGUAGAUGGUAGAGGCCACUUAAGGCUUAUCAAUCUGGGGGAUCGAUGAGGUAGG
(((..((((.(((((((..(((((((...(((((.(....).)))))...))))).)).....)))))))))))..)))..((((((.(((.....))).))))))..... ( -38.70)
>DroSec_CAF1 16902 103 - 1
UUGUCUGACACUCUAUUUUCCCCU-UUUGGGGUAUGGAAACUUAACCAUCAAGGAUGGUAGAU-------GCCACUUAAGGCUUAUCAUUCCAAGGGAUCGAUGAGGUAGG
..((((.....(((((...((((.-...)))).)))))......((((((...))))))))))-------(((......)))(((((((((....)))).)))))...... ( -29.00)
>DroSim_CAF1 17998 103 - 1
UUGUCUGGCACUCUAUUUUCCCCU-UUUGGGGUAUGGAAACUUACCCAUCAAGGAUGGUAGAU-------GCCACUUAAGGCUUAUCAUUCUGAGGGAUCGAUGAGGUAGG
...........(((((...((((.-...)))).)))))..((((((((((.((((((((((..-------(((......)))))))))))))((....)))))).)))))) ( -36.30)
>DroEre_CAF1 18518 101 - 1
UUGUCUGCCACUCUAUUUUGCCCC-UUUCGGGCAUGGCAACUUGCCUAUCAAGGAUGGAGGCG-------GCCACUUAAGGCUUAUCAUUC-GAGGCAUCGAUGAGGU-AG
....(((((.(((((((((((((.-....))))..(((.....))).....)))))))))..(-------(((......))))..((((.(-((....))))))))))-)) ( -35.70)
>DroYak_CAF1 17333 103 - 1
UUGUCUGGCACUCUAUUUUCUCCU-UUUCGGGCAUGGAAACUUGCCUAUCAAGGAUGCUAGAU-------GCCACUUAAGGCUUAUCAUUCUGAGGGAUCGAUGAGGUUGG
(((..(((((.((((.....((((-(...(((((.(....).)))))...)))))...)))))-------))))..)))..((((((((((....)))).))))))..... ( -32.80)
>consensus
UUGUCUGGCACUCUAUUUUCCCCU_UUUGGGGUAUGGAAACUUACCCAUCAAGGAUGGUAGAU_______GCCACUUAAGGCUUAUCAUUCUGAGGGAUCGAUGAGGUAGG
....((.((.(((.....((((.......(((((.(....).))))).....(((((((((.........(((......))))))))))))...)))).....))))).)) (-26.66 = -25.86 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:28 2006