Locus 4575

Sequence ID 2L_DroMel_CAF1
Location 13,122,120 – 13,122,210
Length 90
Max. P 0.529862
window7212

overview

Window 2

Location 13,122,120 – 13,122,210
Length 90
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.21
Mean single sequence MFE -25.34
Consensus MFE -18.12
Energy contribution -18.52
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.72
SVM decision value -0.01
SVM RNA-class probability 0.529862
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13122120 90 - 22407834
GGACAGGCAAAUGGCUAAAACAGCGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU------UUUAGACA
....((((....(((((((...((....))......((((((...((((.......))))...)))))))))))))...)))------)....... ( -20.60)
>DroSec_CAF1 15090 90 - 1
GGACAGGCAAAUGGCUAAAACAACGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU------UUAAGCCA
.....(((....((((((......(((.((....))((((((...((((.......))))...))))))....)))))))))------....))). ( -23.60)
>DroSim_CAF1 16295 90 - 1
GGACAGGCAAAUGGCUAAAACAACGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU------UUAAGCCA
.....(((....((((((......(((.((....))((((((...((((.......))))...))))))....)))))))))------....))). ( -23.60)
>DroEre_CAF1 16728 87 - 1
GGACAGGCAAAUGGCUAAAGCAACGGCGGCAA-CGCGCAGU-UGCCAGUAGAUCAAAUUGAAUAACUGCUUCAGCUUUAGCU------UUUCGCC-
.....(((.((.(((((((((....(((....-)))(((((-((.((((.......))))..)))))))....)))))))))------.)).)))- ( -34.10)
>DroYak_CAF1 15397 96 - 1
GGACAGGCAAAUGGCUAAAACAACGGCAGCAACCGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCUUCAGCUUUAAGCCA
.....(((....(((((((....(((......))).((((((...((((.......))))...)))))))))))))..(((....)))....))). ( -24.80)
>consensus
GGACAGGCAAAUGGCUAAAACAACGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU______UUAAGCCA
.....(((....(((((((.........((....))((((((...((((.......))))...)))))))))))))...))).............. (-18.12 = -18.52 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:27 2006