Locus 4565

Sequence ID 2L_DroMel_CAF1
Location 13,091,387 – 13,091,480
Length 93
Max. P 0.512535
window7191

overview

Window 1

Location 13,091,387 – 13,091,480
Length 93
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 89.43
Mean single sequence MFE -21.38
Consensus MFE -17.70
Energy contribution -17.98
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.32
Structure conservation index 0.83
SVM decision value -0.04
SVM RNA-class probability 0.512535
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13091387 93 - 22407834
CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUG---GUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUCUAAUUUCGCUAAGC
.(((....(((....))).....(((((.....(((((((---((((((.......))).))).)))))))....))))).........))).... ( -20.40)
>DroSec_CAF1 72648 91 - 1
CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUGGCGGUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUGUAAUUUUAC-----
.(((((.......)))))..((.(((((.....(((((((...((((((.......))).))).)))))))....))))).))........----- ( -22.40)
>DroSim_CAF1 70293 91 - 1
CGGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUGGUGGUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUGUAAUUUCAC-----
.(((((.......)))))..((.(((((.....((((((((((((.(((....))).)).))).)))))))....))))).))........----- ( -23.80)
>DroEre_CAF1 73794 93 - 1
CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUG---GUGGCUAAUAAGCAUCACACAUGCUGCGGCAGGUUUUUGUAAUUUCUCUGAGG
.(((((.......)))))........((((((((...(((---(((.((....))))))))...(((....))).))))))))............. ( -21.30)
>DroYak_CAF1 73319 93 - 1
CAGCAAAAAGUUAUUGCUAAACUGAAACAGAAACACAGUG---GUGGCUAAUAAGCAUCACACAUGCUGCGCCAGGUUUUUGUAACUUCUCUUGGG
.(((((.......)))))........((((((((...(((---(((.((....)))))))).....(((...)))))))))))............. ( -19.00)
>consensus
CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUG___GUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUGUAAUUUCACU__G_
.(((((.......)))))..((.(((((.....(((((((...((((((....)))..)))...)))))))....))))).))............. (-17.70 = -17.98 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:08 2006