Locus 456

Sequence ID 2L_DroMel_CAF1
Location 1,340,269 – 1,340,365
Length 96
Max. P 0.577420
window736

overview

Window 6

Location 1,340,269 – 1,340,365
Length 96
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 80.93
Mean single sequence MFE -19.96
Consensus MFE -15.38
Energy contribution -15.27
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -1.20
Structure conservation index 0.77
SVM decision value 0.09
SVM RNA-class probability 0.577420
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1340269 96 - 22407834
-------UUUUUCCCCACUGGC---------CACACUUUCCAGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC
-------............(((---------(((................)))))).........--((((.(((((..(((((........)))))..)).))).)))).... ( -20.19)
>DroSec_CAF1 97630 96 - 1
-------CUUUUCCCCACUGGC---------CACACUUUCCCGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC
-------............(((---------.........(((((....)))))........)))--((((.(((((..(((((........)))))..)).))).)))).... ( -21.03)
>DroSim_CAF1 101591 92 - 1
-----------UCCCCACUGGC---------CACACUUUCCCGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC
-----------........(((---------.........(((((....)))))........)))--((((.(((((..(((((........)))))..)).))).)))).... ( -21.03)
>DroEre_CAF1 110792 112 - 1
UCUUACCUUUCUCCCCACUUGCCACGCUUGCCACGCUUUCCCGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC
........................(((.(((.((((....(((((....))))).......((((--....))))))...((((........)))))).))).)))........ ( -22.00)
>DroYak_CAF1 101551 96 - 1
-------UUUUUCCCCACUUGC---------CACACUUUCCCACUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC
-------.............((---------(((................)))))..........--((((.(((((..(((((........)))))..)).))).)))).... ( -19.49)
>DroAna_CAF1 124177 76 - 1
--------------CCACU------------------------CUGCUUUCUGGCUUUUGUUGCCGCUGUUGGCAGCUCUUUUGUUUUUUCCUCAAGUUGCAUGCGAACAACAG
--------------.....------------------------(((......(((.......)))..((((.(((((...((((.........))))..)).))).)))).))) ( -16.00)
>consensus
_______UUUUUCCCCACUGGC_________CACACUUUCCCGCUCCUCGGUGGCUUUUCUUGCC__UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC
....................................................(((.......)))..((((.(((((..(((((........)))))..)).))).)))).... (-15.38 = -15.27 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:38 2006