| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,062,555 – 13,062,652 |
| Length | 97 |
| Max. P | 0.819905 |
| Location | 13,062,555 – 13,062,652 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -20.59 |
| Energy contribution | -20.90 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.819905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13062555 97 - 22407834 -----------------------GACUUUAAUGCGCUUUGGCAUGCUUUUAGGCAAUAAUUCAUGGAUUAACGCCAUUUGGCUUAAGCUCGUUUCUUUGGCUGCUUUUAGCGCAGAGUUU -----------------------(((((...((((((..((((.(((....(((..(((((....)))))..)))....(((....))).........)))))))...))))))))))). ( -28.30) >DroVir_CAF1 49962 106 - 1 -------AAGAACCAA-AGUCAAAAACUUAAUGCGCUUUGGCAUGCUUUUAGGCAAUAAUUCAUGGAUUAACGCCAUUUGGCUUAAGCUGAUUUCU-UGGCCGCUUUUAGCGCA-----U -------........(-(((.....)))).(((((((..(((.((((....)))).(((((....)))))..((((.(..((....))..).....-)))).)))...))))))-----) ( -28.20) >DroPse_CAF1 56786 97 - 1 -----------------------GACUUUAAUGCGCUUUGGCAUGCUUUUAGGCAAUAAUUCAUGGAUUAACGCCAUUUGGCUUAAGCUCGUUUCUUUGGCCGCUUUUAGCAGAGACUCU -----------------------((.(((((.((.(..((((.((((....)))).(((((....)))))..))))...)))))))).))((((((...((........))))))))... ( -21.60) >DroGri_CAF1 49017 106 - 1 -------AAGAGCCAA-AGUCAAAAACUUAAUGCGCUUUGGCAUGCUUUUAGGCAAUAAUUCAUGGAUUAACGCCAUUUGGCUUAAGCUGAUUUCU-UGGCCGCUUUUAGCGCA-----U -------....(((((-(((((.........)).))))))))..(((...((((..(((((....)))))..((((.(..((....))..).....-)))).))))..)))...-----. ( -29.40) >DroWil_CAF1 45507 116 - 1 AAAAAUGAAGAAAGAA-AUACACAGACUUAAUGCGCUUUGGCAUGCUUUUAGGCAAUAAUUCAUGGAUUAACGCCAUUUGGUUUAAGCUUAUUUCUUUGGCUGCUUUUAGCAAA---AUU ..........((((((-(((...((.(((((...(((.((((.((((....)))).(((((....)))))..))))...))))))))))))))))))).((((....))))...---... ( -25.00) >DroMoj_CAF1 55504 107 - 1 -------AAGAACGAAGAGUCAAAAACUUAAUGCGCUUUGGCAUGCUUUUAGGCAAUAAUUCAUGGAUUAACGCCAUUUCGCUUAAGCUGAUUUCU-UGGCCGCUUUUAGCGCA-----U -------.....(((..(((((....(((((.(((...((((.((((....)))).(((((....)))))..))))...)))))))).)))))..)-))((.((.....)))).-----. ( -28.40) >consensus _______AAGAAC_AA_AGUCAAAAACUUAAUGCGCUUUGGCAUGCUUUUAGGCAAUAAUUCAUGGAUUAACGCCAUUUGGCUUAAGCUGAUUUCU_UGGCCGCUUUUAGCGCA_____U ...............................((((((..(((.((((....)))).(((((....)))))..((((.(..((....))..)......)))).)))...))))))...... (-20.59 = -20.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:00 2006