Locus 4557

Sequence ID 2L_DroMel_CAF1
Location 13,060,989 – 13,061,083
Length 94
Max. P 0.603835
window7179

overview

Window 9

Location 13,060,989 – 13,061,083
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.84
Mean single sequence MFE -29.44
Consensus MFE -23.82
Energy contribution -23.78
Covariance contribution -0.04
Combinations/Pair 1.10
Mean z-score -1.56
Structure conservation index 0.81
SVM decision value 0.14
SVM RNA-class probability 0.603835
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13060989 94 - 22407834
CGGGAAGAAACAAUCGGGCCCAAGCAAAUGGCAAACUUUGCGA--------------------------GACUUAUCCGUAAAUUAAACUUGGAAAACAACCAAGUUUUGAUUGGACGGU
.(((..((.....))...)))..(((((.(.....))))))..--------------------------.......((((.((((((((((((.......))))).)))))))..)))). ( -24.70)
>DroSec_CAF1 42602 117 - 1
CGGGAAGAAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAA--CAACAGGACUUAUCCGUAAAUUAGACUUGGA-AACAACCAAGUUUUGAUUGGACGGU
.(((..((.....))...)))..(((((.(.....)))))).........(((((.((...--.....)).)))))((((.((((((((((((.-.....))))).)))))))..)))). ( -29.40)
>DroSim_CAF1 38265 117 - 1
CGGGAAGAAACAAUCGAGCCCAGGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAG--CAACAGGACUUAUCCGUAAAUUAGACUUGGA-AACAACCAAGUUUUGAUUGGACGGU
.(((..((.....))...)))..(((((.(.....))))))..((..((((.....)))))--)............((((.((((((((((((.-.....))))).)))))))..)))). ( -29.70)
>DroEre_CAF1 42330 118 - 1
CGGGAAGGAACAAUCGAGCCCGAGCAAAUGGCAAACUUUGCCAGCAAUUGGUUAGACCAAG--CAACAGGACUUAUCCGUAAAUUAGACUUAGAGAGCAGACGAGUUUUGAUUGCACGGU
((((...((....))...)))).((...(((((.....)))))))..((((.....))))(--((((((((((..((.((................)).))..))))))).))))..... ( -30.49)
>DroYak_CAF1 42210 120 - 1
CGGGAAGGAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCCAGGAUUUGGUAAGACCAAGACCAACAGGACUUAUCCGUAAAUUAGACUUGGAGAACAACCGAGUUUUGAUUGCACGGU
.(((...((....))...)))((((...(((((.....)))))((.(((((.....))))).)).....).)))..((((.((((((((((((.......))))).)))))))..)))). ( -32.90)
>consensus
CGGGAAGAAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAG__CAACAGGACUUAUCCGUAAAUUAGACUUGGA_AACAACCAAGUUUUGAUUGGACGGU
.(((..((.....))...)))..(((((.(.....))))))......((((.....))))................((((.((((((((((((.......))))).)))))))..)))). (-23.82 = -23.78 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:57 2006