Locus 4556

Sequence ID 2L_DroMel_CAF1
Location 13,059,024 – 13,059,120
Length 96
Max. P 0.726367
window7178

overview

Window 8

Location 13,059,024 – 13,059,120
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 88.61
Mean single sequence MFE -24.42
Consensus MFE -18.33
Energy contribution -18.69
Covariance contribution 0.36
Combinations/Pair 1.17
Mean z-score -3.23
Structure conservation index 0.75
SVM decision value 0.41
SVM RNA-class probability 0.726367
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13059024 96 + 22407834
UUCUUGUUUGCACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCGUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAACGACGUGUGCAUAAUAU
....(((((((((........(((((....(((((....)))))(((....)))...)))))....(((((.......)))))..))))).)))). ( -29.40)
>DroSec_CAF1 40646 96 + 1
UUCUUGUUUACACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCGUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU
...((((.(((((........(((((....(((((....)))))(((....)))...)))))....(((((.......)))))))))).))))... ( -26.70)
>DroSim_CAF1 36310 96 + 1
UUCUUGUUUACACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCGUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU
...((((.(((((........(((((....(((((....)))))(((....)))...)))))....(((((.......)))))))))).))))... ( -26.70)
>DroEre_CAF1 40183 96 + 1
UUCUUGUUUACACUUUUCCCAGGGCCUUUUGCUUGUCCACAAGCAGAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU
...((((.(((((.........((((.((((((((....))))))))..........)))).....(((((.......)))))))))).))))... ( -25.50)
>DroYak_CAF1 40070 95 + 1
UUCUUGUUUACACUU-UCCCAUGGCCUUUUGCUUGCUCACAAGCAGAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU
...((((.(((((..-.....(((((.((((((((....))))))))..........)))))....(((((.......)))))))))).))))... ( -25.70)
>DroAna_CAF1 28613 92 + 1
UUUUUCCCUCCACUUUCUUGA--GUCUCUUCGUUG--AACAAACAAGUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGUAUAAUGC
..................(((--(...(((.(((.--....))))))..))))(((((....((.((((((.......)))))).))...))))). ( -12.50)
>consensus
UUCUUGUUUACACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCAUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU
...((((.(((((.........((((...((((((....))))))............)))).....(((((.......)))))))))).))))... (-18.33 = -18.69 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:56 2006