Locus 4555

Sequence ID 2L_DroMel_CAF1
Location 13,058,181 – 13,058,272
Length 91
Max. P 0.652594
window7177

overview

Window 7

Location 13,058,181 – 13,058,272
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 76.67
Mean single sequence MFE -29.93
Consensus MFE -17.49
Energy contribution -18.22
Covariance contribution 0.72
Combinations/Pair 1.19
Mean z-score -1.56
Structure conservation index 0.58
SVM decision value 0.25
SVM RNA-class probability 0.652594
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13058181 91 - 22407834
CAGUCAGGGCCAUGAAUAUGGCCACCGGGCAGCUGGUCAGUCUCAGUUCUCAA---------------UUCUCGGAUGGCAAAUCCCACUUCUGCCACCGGAAUCA
.......((((((....))))))...(((.((((((......))))))))).(---------------(((.(((.(((((...........)))))))))))).. ( -30.10)
>DroVir_CAF1 45372 69 - 1
CAGUCAGGGCCAUGGAUAUGGCCA-------GCUGGUCAGUCAACGC--U-GA-------------------AAUCUCGUUCUUCAGACUUCAGUCA--------A
((((...((((((....)))))).-------))))..........((--(-((-------------------(.(((........))).))))))..--------. ( -20.70)
>DroSec_CAF1 39805 90 - 1
CAGUCAGGGCCAUGAAUAUGGCCACCG-GCAGCUGGUCAGUCUCAGUUCGCGA---------------UUCUCGGAUGGCAAAUCCCACUUCUGCCACCGGAAUCA
.......((((((....))))))....-((((((((......)))))).))((---------------(((.(((.(((((...........))))))))))))). ( -33.80)
>DroSim_CAF1 35452 91 - 1
CAGUCAGGGCCAUGAAUAUGGCCACCGGGCAGCUGGUCAGUCUCAGUUCGCGA---------------UUCUCGGAUGGCAAAUCCCACUUCUGCCACAGGAAUCA
.......((((((....)))))).....((((((((......)))))).))((---------------((((..(.(((((...........)))))).)))))). ( -28.30)
>DroEre_CAF1 39258 104 - 1
CAGUCAGGGCCAUGAAUAUGGCCACCG-GCAGCUGGUCAGUCUCAGUUCUCGA-UUCCCGAGUCUCGAUUCUCGGAUGGCAAAUGCCACUUCUGCCACCGGAAUCA
..(((.(((((((....)))))).).)-))((((((......))))))((((.-....))))....(((((.(((.(((((...........))))))))))))). ( -37.10)
>DroYak_CAF1 39248 99 - 1
CAGUCAGGGCCAUGAAUAUGGCCACCG-GCAGCUGGUCAGUCUCAGUUCUCUAGUUCUCGAG------CUCUCGGAUGGCAAAUCGCAUUUCUGCCACCGGAAUCA
..(((.(((((((....)))))).).)-))..(((((..((((.((..(((........)))------..)).))))((((...........)))))))))..... ( -29.60)
>consensus
CAGUCAGGGCCAUGAAUAUGGCCACCG_GCAGCUGGUCAGUCUCAGUUCUCGA_______________UUCUCGGAUGGCAAAUCCCACUUCUGCCACCGGAAUCA
.......((((((....)))))).......((((((......)))))).......................((((.(((((...........)))))))))..... (-17.49 = -18.22 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:54 2006