Locus 4552

Sequence ID 2L_DroMel_CAF1
Location 13,046,653 – 13,046,748
Length 95
Max. P 0.997248
window7174

overview

Window 4

Location 13,046,653 – 13,046,748
Length 95
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 73.88
Mean single sequence MFE -23.85
Consensus MFE -12.44
Energy contribution -14.25
Covariance contribution 1.81
Combinations/Pair 1.10
Mean z-score -2.86
Structure conservation index 0.52
SVM decision value 2.82
SVM RNA-class probability 0.997248
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13046653 95 + 22407834
AUG------CUAUAUAUAUGAUAUAUGCUUCUGCAAAUAUAUUAUUCAGCUUGUUUAUUGAGAA----UCAGA--------UAAGCUAUUUUGUAGCAGUGUAAGCAUAAAAA
.((------(((((...(((((((((((....)))..))))))))..(((((((((..(....)----..)))--------))))))....)))))))(((....)))..... ( -21.70)
>DroSec_CAF1 28306 101 + 1
AUGCUAUAUAUAUAUAUAUGAUGUAUGCUUAUGCAAAUAUUAUAUUCAGUUUGUUUACUGAGAA----GCAGA--------UAAGCUAUUUUGUAGCAGUGUAUGCACAGCAA
.(((((((.......(((((((((.(((....))).)))))))))..(((((((((.((....)----).)))--------))))))....)))))))(((....)))..... ( -27.40)
>DroSim_CAF1 23903 95 + 1
AUG------AUAUAUAUAUGAUAUAUGCUUAUGCUAAUAUAUUAUUCAGUUUGUUUACUGAGAA----GCAGU--------UAAGCUAUUUUGUAGCAGUGUAUGCACAGCAA
...------.........((((((((((....))..))))))))((((((......))))))..----((...--------...(((((...))))).(((....))).)).. ( -19.80)
>DroEre_CAF1 27763 95 + 1
-------------AUAUUUGAUAUAUGCUU--GCAAAUAUUUUAUGUAGUUUGUUUAUACGAAAUCCCGCAAUUAGGGAUA---GCUAUUUUGUAGCAGUGUAAGCACGCCAA
-------------((((..(((((.((...--.)).)))))..)))).((.(((((((((...(((((.......))))).---(((((...))))).))))))))).))... ( -26.50)
>consensus
AUG______AUAUAUAUAUGAUAUAUGCUUAUGCAAAUAUAUUAUUCAGUUUGUUUACUGAGAA____GCAGA________UAAGCUAUUUUGUAGCAGUGUAAGCACAGCAA
.........................(((((((((..........((((((......))))))......................(((((...))))).)))))))))...... (-12.44 = -14.25 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:51 2006