Locus 4551

Sequence ID 2L_DroMel_CAF1
Location 13,040,575 – 13,040,677
Length 102
Max. P 0.682192
window7173

overview

Window 3

Location 13,040,575 – 13,040,677
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.63
Mean single sequence MFE -20.26
Consensus MFE -9.41
Energy contribution -9.00
Covariance contribution -0.41
Combinations/Pair 1.16
Mean z-score -2.02
Structure conservation index 0.46
SVM decision value 0.31
SVM RNA-class probability 0.682192
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13040575 102 - 22407834
----------CGGCUCGA---AGAAUAUUUAAUAAACAAAACUUGUGCUAAUCGUUAAAUUAUGAUUAAUGUGCCGACAACAAACAAUAAACUUGGCCGC--C---CAAGAACACCAAAA
----------((((.((.---..............(((.....)))..(((((((......))))))).)).))))...............(((((....--)---)))).......... ( -16.80)
>DroVir_CAF1 23276 84 - 1
-----------UGCU------GGAAUAUUUAAUAAACAAAACUUGCGCUAAUCAUUAAAUUAUGAUUAAUGUGCCGACAAU----------UUUGGCAGC--CAGC-------ACCAAAA
-----------((((------((.....................(((.(((((((......))))))).)))(((((....----------.)))))..)--))))-------)...... ( -22.30)
>DroPse_CAF1 27905 111 - 1
------CCAGCGGCUCGGGUGGAAAUAUUUAAUAAACAAAACUUGCGCUAAUCGUUAAAUUAUGAUUAAUGUGACGACAACAAACAAUAAACUUGGCCGCGGC---AAAGAACACCAAAA
------((.((((((.(((((.((..................)).)))...((((((.((((....)))).))))))..............)).)))))))).---.............. ( -21.57)
>DroMoj_CAF1 27181 91 - 1
-----------CGCU------GGAAUAUUUAAUAAACAAAACUUGCGCUAAUCAUUAAAUUAUGAUUAAUGUGCCGACAAU----------UUUGGCAGC--CAGCCGACAAAAGCAAAA
-----------.(((------((.....................(((.(((((((......))))))).)))(((((....----------.)))))..)--)))).............. ( -21.30)
>DroAna_CAF1 14343 101 - 1
-----------GGCUCUA---AGAAUAUUUAAUAAACAAAACUUGCGCUAAUCGUUAAAUUAUGAUUAAUGUGCCGACAACAAACAAUAAACUUGGCCGG--C---AGAGAACACCGAAA
-----------((((((.---.......................(((.(((((((......))))))).)))((((.(((............)))..)))--)---))))....)).... ( -17.10)
>DroPer_CAF1 25103 117 - 1
CGACUUCCAGCGGCUCGGGUGGAAAUAUUUAAUAAACAAAACUUGCGCUAAUCGUUAAAUUAUGAUUAAUGUGACGACAACAAACAAUAAACUUGGCCGCGGC---AAAGAACACCAAAA
...(((((.((((((.(((((.((..................)).)))...((((((.((((....)))).))))))..............)).)))))))).---.))).......... ( -22.47)
>consensus
___________GGCUCG____GGAAUAUUUAAUAAACAAAACUUGCGCUAAUCGUUAAAUUAUGAUUAAUGUGCCGACAACAAACAAUAAACUUGGCCGC__C___AAAGAACACCAAAA
...........(((............................(((((((((((((......)))))))..))).)))(((............))))))...................... ( -9.41 =  -9.00 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:50 2006