Locus 4546

Sequence ID	2L_DroMel_CAF1
Location	13,026,730 – 13,026,823
Length	93
Max. P	0.806769

overview

Window 6

Location	13,026,730 – 13,026,823
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	80.11
Mean single sequence MFE	-37.08
Consensus MFE	-26.28
Energy contribution	-27.16
Covariance contribution	0.88
Combinations/Pair	1.36
Mean z-score	-1.80
Structure conservation index	0.71
SVM decision value	0.63
SVM RNA-class probability	0.806769
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13026730 93 + 22407834
GAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGUGGAGGACGCCGAGGCGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCAUCGAA
........((((((((((..(....(((.((...(((((.....)))))...))..))).).))))))))))((((..........))))... ( -41.10)
>DroSim_CAF1 4136 93 + 1
GAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGUGGAGGACGCCGAGGCGGACGCUGAGCCGGCGGCCGAUGAAGUGGAGGCCACCGAA
........((((((((((..(((((....((...(((((.....)))))...))..))))).))))))))))......((((...)))).... ( -44.30)
>DroEre_CAF1 8318 93 + 1
GAGGAUGACGCUGCCGUCGGCGGUGGCGACGAUGUGGAGGAGGACGCCGAGGCGGACGCGGAGCCGGCGGCCGAUGAAGUGGAGGCCACUGAA
..((....((((..(((((((.(((((..((..........(..(((....)))..).))..))).)).))))))).))))....))...... ( -38.60)
>DroYak_CAF1 6976 81 + 1
GAGGAUGAGGCUGCCGGCGGCGGUGGCGGU------------GGCGACGAUGUGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCACUGAU
........((((((((((.(((.(.(((.(------------(....)).))).).)))...)))))))))).....(((((...)))))... ( -38.90)
>DroAna_CAF1 198 89 + 1
GCGGAUUA-GCUGGCGGUGGUGGUGGCGACGAUGCAGAACAGGAU---GAUGCGGAUGCAGAACCGGCAGCCGAUGAAUUGGACGCUAUCGAU
(((.....-((((.((((.((..(.(((.(.((.(......).))---).))).)..))...)))).))))(((....)))..)))....... ( -22.50)
>consensus
GAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGAGGAGGACGCCGAGGCGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCACCGAA
........((((((((((.(((.(.((..((.(((........))).))..)).).)))...))))))))))......((((...)))).... (-26.28 = -27.16 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:43 2006