Locus 4544

Sequence ID 2L_DroMel_CAF1
Location 13,023,815 – 13,023,933
Length 118
Max. P 0.597226
window7161

overview

Window 1

Location 13,023,815 – 13,023,933
Length 118
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 73.39
Mean single sequence MFE -46.75
Consensus MFE -20.51
Energy contribution -20.02
Covariance contribution -0.49
Combinations/Pair 1.44
Mean z-score -1.82
Structure conservation index 0.44
SVM decision value 0.13
SVM RNA-class probability 0.597226
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13023815 118 + 22407834
UGCAGCGCCGUGUGCUCCUCCAUUUCCGCCUCCUCAUUGGCAUUGUAAUCACAAUGGGCACAUUUCUGGCAGUUCGGAGGUGGAGGAUUUACGCAGGCGUGCUUCUGUAGAUGCUGCA
.(((((((((((((.(((((((((((((((........)))(((((......((((....))))....)))))..))))))))))))..))))).))).(((....)))...))))). ( -50.80)
>DroVir_CAF1 4924 118 + 1
UGCACAGCGGUGUGCUCCUCCAGUUCGGCCUCCUCGACGGCAUUGUAGUCGCAAUGGGCACACUGCUGCGCCUCCGGGCUGGGCUGAUUGAUGCAGGCAUGUUUCUGCAGAUGCUCCG
.((.(((((((((((((..........(((........)))(((((....)))))))))))))))))).))...(((((....(((...((.(((....))).))..)))..)).))) ( -45.70)
>DroGri_CAF1 4744 118 + 1
UGCACCGCAGUGUGCUCCUCGAGUUCGGCCUCGUCCACGACGCUAUAGUCACAGUGGGCACACUGUUGUGCCUCCACCGGCGGCUGUUUAACGCAUGCAUGUUGCCGCAGAUGCUGCU
.((((.(((((((((((((.((.(..(((.(((....))).)))..).))..)).))))))))))).)))).......(((((((((.........))).))))))((((...)))). ( -48.50)
>DroEre_CAF1 5393 118 + 1
UGCAGCGCCGUGUGCUCCUCCAUUUCCGCCUCCUCACUGGCAUUGUAAUCACAGUGGGCACAUUUGUGGUAGUUGGGAGGCGGCGGAUUCACGCAGGCGUGCUUCUGGAGAUGCUGCA
.(((((((.....))..((((....(((((((((.((((.((((((....))))))..(((....))).)))).))))))))).(((..((((....))))..)))))))..))))). ( -52.80)
>DroWil_CAF1 3956 118 + 1
UGCACGAUCGUAUGCUCUUCUAUCUCUGGCUCCUCGGUGGCGGUAUAAUCACAAUGGGCACACUGAUGGGCACCAGGUGGUGGAGGAUUGAUGCAGGCAUGCUUUUGCAAAUGCUGCU
(((((((((.....((((.((((((...((((.((((((((................)).)))))).))))...)))))).))))))))).))))(((((((....)))..))))... ( -40.29)
>DroMoj_CAF1 4638 118 + 1
UGCACUGCCGUGUGCUCGUCCAGCUCCGCUUCCUCCACGGCAUUGUAGUCACAGUGAGCGCACUGCAUCGCCUCUGCGCUGGGCUCAUUGAUGCAGGCAUGCUUCUGCAGAUGCUGCU
((((.(((((((.(((.....)))...........))))))).))))....((((((((.((.((((.......)))).)).))))))))..((((.(((((....)))..)))))). ( -42.40)
>consensus
UGCACCGCCGUGUGCUCCUCCAGUUCCGCCUCCUCAACGGCAUUGUAAUCACAAUGGGCACACUGCUGGGCCUCCGGAGGCGGCGGAUUGACGCAGGCAUGCUUCUGCAGAUGCUGCU
.........((((((((..........(((........)))(((((....))))))))))))).............................(((.((((((....)))..)))))). (-20.51 = -20.02 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:38 2006