| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,993,517 – 12,993,609 |
| Length | 92 |
| Max. P | 0.710133 |
| Location | 12,993,517 – 12,993,609 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 79.05 |
| Mean single sequence MFE | -16.56 |
| Consensus MFE | -9.54 |
| Energy contribution | -11.54 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12993517 92 - 22407834 UUUUUUGUGGAAUA-UCCUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUG-UGGGUAUUUAUA .........(((((-(....))))))((((.(((....((((((....((((((......))))))......)))))).))-)))))....... ( -17.00) >DroSec_CAF1 18726 93 - 1 UUUUUUUCGGAAUACUCUUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUG-UGGGUAUUUAUA .........((((((.....))))))((((.(((....((((((....((((((......))))))......)))))).))-)))))....... ( -19.10) >DroSim_CAF1 17510 91 - 1 U--UUUUCGGAAUACUCUUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUG-UGGGUAUUUAUA .--......((((((.....))))))((((.(((....((((((....((((((......))))))......)))))).))-)))))....... ( -19.10) >DroYak_CAF1 17789 93 - 1 UUUUUUUCGGAAUACUCUUCGUGUUCACCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUCUGGCAUUGCGUUG-UGGGUAUUUAUA .........((((((.....))))))((((.(((....((((((....((((((......))))))......)))))).))-)))))....... ( -18.10) >DroAna_CAF1 25628 72 - 1 ------------------UUUUUUUCGGCCU---UUCCUGCCAUUAUUGUUU-UUGUUUUAAUAACUUUGUUGUUUUAAAAUCGGGAAUUUACA ------------------........(((..---.....)))......((((-(((((((((.(((......))))))))).)))))))..... ( -9.50) >consensus UUUUUUUCGGAAUACUCUUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUG_UGGGUAUUUAUA .........((((((.....))))))((((........((((((....((((((......))))))......)))))).....))))....... ( -9.54 = -11.54 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:30 2006