| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,991,371 – 12,991,470 |
| Length | 99 |
| Max. P | 0.537543 |
| Location | 12,991,371 – 12,991,470 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.88 |
| Mean single sequence MFE | -34.55 |
| Consensus MFE | -11.01 |
| Energy contribution | -13.15 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12991371 99 - 22407834 AGCGGCAUGG-GAUG-GGGUGGGAUUUUUUCCCAAGAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCUC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .(((((((..-((.(-((.(((((.....))))).(((((((((........)))))))))))---------)(((.(--(..((.....))..)).))).))..)))))))--- ( -34.50) >DroPse_CAF1 36091 109 - 1 CGAGGA-CGGGGACGGGGACGG-GA----CCAGGACAAGAGUUAUUACAUUUUAGCUUUUCCUGCAGAGCCACUCCUCGUGCUCGUCUUGCGUUUAUUCUUUCAUCUUCUGGUGG ((((((-((((.(((((((..(-(.----.(((((..(((((((........)))))))))))).....))..))))))).)))))))).))..........((((....)))). ( -41.60) >DroSec_CAF1 16706 99 - 1 AGCGGCAAGGGGGUG-CGUUG-GGAUUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCUC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .((((((.((((...-.((((-(((....)))))))((((((((........)))))))))))---------)(((.(--(..((.....))..)).)))......))))))--- ( -36.60) >DroSim_CAF1 15480 100 - 1 AGCGGCAAGGGGGUG-GGCUGGGGAUUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCUC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .((((((((((..((-(((((((((....))))...((((((((........))))))))...---------))))))--)..).))))))....(..(......)..))))--- ( -36.20) >DroYak_CAF1 15659 98 - 1 AGCGGCGAGG-GGUG-GAAUGG-GAAUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCGC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .(((((((((-....-...(((-((....)))))..((((((((........)))))))))))---------)(((((--(..((.....))..)))))).......)))))--- ( -35.00) >DroAna_CAF1 23704 90 - 1 AGGGAAAAGGGGGCG-GGG-----------CACGACAAGAGUUAUUACAUUCUAGCGUUUCCU---------CUGCUC--UUUCGUCUUGCGUUUGUGCUUUCAUCUUCUACU-- .((((..((((((((-(((-----------.(((.(.(((((......))))).))))...))---------))))))--)))..))))(((....)))..............-- ( -23.40) >consensus AGCGGCAAGGGGGUG_GGAUGG_GAUUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU_________CGGCUC__GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC___ .((((((.(((((((.(((((...............((((((((........)))))))).............(((........)))...))))).)))))))...))))))... (-11.01 = -13.15 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:29 2006