| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,982,744 – 12,982,858 |
| Length | 114 |
| Max. P | 0.887024 |
| Location | 12,982,744 – 12,982,858 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 95.70 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -23.65 |
| Energy contribution | -22.90 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.887024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12982744 114 + 22407834 AAGGGGUUAAGCCAUUGAGCUUUAAUGCAAAAUUUCAAUUGAACGUCAAACAGUCAAU-UCGCUUUAGCGGCGAUAAUCGUAAAAGGAUAAUGGCGCUAAAAGCGCAUAAAAAGG--- .((((.((((....)))).)))).((((........((((((..(.....)..)))))-).(((((((((.((.((.((......)).)).)).)))).))))))))).......--- ( -24.80) >DroVir_CAF1 7606 114 + 1 AAAGGGUUAAGCCAUUGAGCUUUAAUGCAAAAUUUCAAUUGAACGUCAAACAGUCAAU-UCGCUUUAGCAGCGAUAAUCGUAAAAGGAUAAUGGUGCUAAAAGCGCAUAAAAAGG--- .((((.((((....)))).)))).((((........((((((..(.....)..)))))-).(((((((((.((.((.((......)).)).)).)))).))))))))).......--- ( -23.80) >DroPse_CAF1 24503 117 + 1 AAGGGGUUAAGCCAUUGAGCUUUAAUGCAAAAUUUCAAUUGAACGUCAAACAGUCAAU-UCGCUUUAGCGGCGAUAAUCGUAAAAGGAUAAUGGUGCUAAAAGCGCAUAAAAUGGCAG ..........((((((..(((((...(((..(((((((((((..(.....)..)))))-)(((....)))(((.....))).....)).)))..)))..)))))......)))))).. ( -25.90) >DroEre_CAF1 9791 115 + 1 AAGGGGUUAAGCCAUUGAGCUUUAAUGCAAAAUUUCAAUUGAACGUCAAACAGUCAAUUUUGCUUUAGCGGCGAUAAUCGUAAAAGGAUAAUGGCGCUAAGAGCGCAUAAAAAGG--- .((((.((((....)))).)))).((((........((((((..(.....)..))))))..(((((((((.((.((.((......)).)).)).)))).))))))))).......--- ( -24.60) >DroYak_CAF1 7388 115 + 1 AAGGGGUUAAGCCAUUGAGCUUUAAUGCAAAAUUUCAAUUGAACGUCAAACAGUCAAUUUUGCUUUAGCGGCGAUAAUCGUAAAAGGAUAAUGGCGCUAAGAGCGCAUAAAAAGG--- .((((.((((....)))).)))).((((........((((((..(.....)..))))))..(((((((((.((.((.((......)).)).)).)))).))))))))).......--- ( -24.60) >DroPer_CAF1 24437 117 + 1 AAGGGGUUAAGCCAUUGAGCUUUAAUGCAAAAUUUCAAUUGAACGUCAAACAGUCAAU-UCGCUUUAGCGGCGAUAAUCGUAAAAGGAUAAUGGUGCUAAAAGCGCAUAAAAUGGCAG ..........((((((..(((((...(((..(((((((((((..(.....)..)))))-)(((....)))(((.....))).....)).)))..)))..)))))......)))))).. ( -25.90) >consensus AAGGGGUUAAGCCAUUGAGCUUUAAUGCAAAAUUUCAAUUGAACGUCAAACAGUCAAU_UCGCUUUAGCGGCGAUAAUCGUAAAAGGAUAAUGGCGCUAAAAGCGCAUAAAAAGG___ .((((.((((....)))).)))).((((.........(((((..(.....)..)))))...(((((((((.((.((.((......)).)).)).)))).))))))))).......... (-23.65 = -22.90 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:28 2006