Locus 4530

Sequence ID 2L_DroMel_CAF1
Location 12,973,637 – 12,973,757
Length 120
Max. P 0.767800
window7130

overview

Window 0

Location 12,973,637 – 12,973,757
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.23
Mean single sequence MFE -24.22
Consensus MFE -16.54
Energy contribution -17.14
Covariance contribution 0.60
Combinations/Pair 1.12
Mean z-score -1.91
Structure conservation index 0.68
SVM decision value 0.52
SVM RNA-class probability 0.767800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12973637 120 - 22407834
CCCCUUUUUUUUUUAUUACCAUUUUAAGUAAAAAAAAGAAACUGACAGCGGUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC
....(((((((((((((.........)))))))))))))..........((..((((((((((.(((((.....((...))......(((....)))..))))).))))))))))..)). ( -28.30)
>DroSec_CAF1 18245 114 - 1
CC---UUUUUUUCUACA---AAUUUAAGUUAAAAAAAGAAGCUCACAACGCUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC
.(---(((((((..((.---.......)).))))))))...........((.(((((((((((.(((((.....((...))......(((....)))..))))).))))))))))))).. ( -21.90)
>DroSim_CAF1 19367 116 - 1
CC---UUUUUUUGUAUAACCAAUUUAAGU-AAAAAAAGAAACUAACAGCGCUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC
.(---((((((((..(((.....)))..)-))))))))...........((.(((((((((((.(((((.....((...))......(((....)))..))))).))))))))))))).. ( -23.10)
>DroEre_CAF1 6879 108 - 1
------U-----UUAAUACCAUGUUGGGC-AAAAAAUUAAACGUACUGCGGAUGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGAUAUUUGCCAAUGGUUUGAGUUUUUGCUGUCC
------.-----..............(((-(((((.((((((....(((((((.(((.....)))......)))))))..(((((......))))).....)))))).)))))))).... ( -24.20)
>DroYak_CAF1 21216 113 - 1
------UUUUGUUUAAUACAAUGUAAGGC-AAAAAAUGAAAAUUACUGCGGUGGCAAAAACGUUGAUUAAAAUCCGCAUCGUAAACAGAUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC
------..((((.....))))......((-(...(((....)))..)))((..((((((((((.(((....))).))...(((((......)))))...........))))))))..)). ( -23.60)
>consensus
CC___UUUUUUUUUAAUACCAUUUUAAGU_AAAAAAAGAAACUUACAGCGGUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC
.................................................((((((((((((((.(((((......(((..(((......))).)))...))))).)))))))))))))). (-16.54 = -17.14 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:09 2006