Locus 453

Sequence ID 2L_DroMel_CAF1
Location 1,335,838 – 1,335,946
Length 108
Max. P 0.908381
window733

overview

Window 3

Location 1,335,838 – 1,335,946
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.06
Mean single sequence MFE -22.72
Consensus MFE -8.79
Energy contribution -9.27
Covariance contribution 0.48
Combinations/Pair 1.25
Mean z-score -2.07
Structure conservation index 0.39
SVM decision value 1.06
SVM RNA-class probability 0.908381
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1335838 108 - 22407834
AAUGAAAGGGAAUUUGAAAGUGAUGAGUAAAGAAUCCUUACGAAAUUUUAAUGAGGAUUCAUAAGGCUUGUGACUUAGGAUACAAACUGUGG------------UAAUGACUCAAAAAAU
............(((((((((.(..(((...(((((((((...........))))))))).....)))..).))))....(((.....))).------------.......))))).... ( -21.00)
>DroSec_CAF1 93208 108 - 1
AAUGAAAGGGAAUUCGAAAGUGAUGAGUGAAGAAU------------GUAAUCAGGAUUCAUAAGGCUUGUGACGUAGGAUACAAAGAGUUGAAUGGCAUAAGCGAAUGACUCAAAAAAG
.......(((.((((...........(((((...(------------(....))...)))))...(((((((.(((..(((.......)))..))).)))))))))))..)))....... ( -19.80)
>DroSim_CAF1 97115 108 - 1
AAUGAAAGGGAAUUCGAAAGUGAUGAGUGAAGAAU------------GUAAUCAGGAUUCAUAAGGCUUGUAACUUAGGAUACAAAGAGUUGAAUGGCAUAAGCGAAUGACUCAAAAAAG
.......(((.(((((..........(((((...(------------(....))...)))))...(((..((((((..........))))))...))).....)))))..)))....... ( -18.10)
>DroEre_CAF1 106406 102 - 1
AAUGAAAGAGAAUUCGAAAAUGCUGAGUGAAGA-CCCUGGCGAAAGUGUAAUGAGGAUUCAUAAGGCUUGUGACUUAGCGUGCAGAG--CU-------------GAAUGGCUCAAAA--U
...............(...(((((((((.(.((-.(((.((....))...(((......))).))).)).).))))))))).).(((--((-------------....)))))....--. ( -26.00)
>DroYak_CAF1 96891 119 - 1
AAUGAAAGAGAAUUCGAAAAUGAUGAGUGAAGAAUCCGGACGAAAGUGUAAUGAGGAUUCAUGGGGCUUGUGACUUAGAGUACAAAGAGUUGACUGGCACCAGCGAAUGGCUCAAAA-UU
.......(((.(((((...............(((((((.((....)).).....)))))).(((.(((.(((((((..........))))).)).))).))).)))))..)))....-.. ( -28.70)
>consensus
AAUGAAAGGGAAUUCGAAAGUGAUGAGUGAAGAAUCC___CGAAA_UGUAAUGAGGAUUCAUAAGGCUUGUGACUUAGGAUACAAAGAGUUGA_UGGCA__AGCGAAUGACUCAAAAAAU
.......................(((((...((((((.................)))))).......(((((........)))))........................)))))...... ( -8.79 =  -9.27 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:35 2006