Locus 4523

Sequence ID 2L_DroMel_CAF1
Location 12,964,557 – 12,964,677
Length 120
Max. P 0.858414
window7116

overview

Window 6

Location 12,964,557 – 12,964,677
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -31.91
Consensus MFE -29.60
Energy contribution -29.82
Covariance contribution 0.22
Combinations/Pair 1.05
Mean z-score -1.21
Structure conservation index 0.93
SVM decision value 0.82
SVM RNA-class probability 0.858414
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12964557 120 - 22407834
UAUGCACUCUUUGAUUGCAUGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA
...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42)
>DroPse_CAF1 44076 120 - 1
UAUGCACUCUUUGAUUGCACGGAGCAGCGAGCAUCGGGGGCACAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGCUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA
...(((....((((((.((.((((((((((((((.(.(((((.((((((((....)))).))))..))))).).))).))))))))..((((.....)))).)))))))))))..))).. ( -30.90)
>DroSec_CAF1 9343 120 - 1
UAUGCACUCUUUGAUUGCAUGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA
...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42)
>DroSim_CAF1 10169 120 - 1
UAUGCACUCUUUGAUUGCAUGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA
...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42)
>DroYak_CAF1 10869 120 - 1
UAUGCACUCUUUGAUUGCACGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCG
...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42)
>DroPer_CAF1 42428 120 - 1
UAUGCACUCUUUGAUUGCACGGAGCAGCGAGCAUCGGGGGCACAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGCUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA
...(((....((((((.((.((((((((((((((.(.(((((.((((((((....)))).))))..))))).).))).))))))))..((((.....)))).)))))))))))..))).. ( -30.90)
>consensus
UAUGCACUCUUUGAUUGCACGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA
...(((....((((((.((.((((..(((((((((((((((((((.((((.((...)).))))....)))))))....))))))))))))...........))))))))))))..))).. (-29.60 = -29.82 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:54 2006