Locus 4517

Sequence ID 2L_DroMel_CAF1
Location 12,955,396 – 12,955,508
Length 112
Max. P 0.881554
window7102

overview

Window 2

Location 12,955,396 – 12,955,508
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 86.14
Mean single sequence MFE -24.42
Consensus MFE -16.73
Energy contribution -16.73
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.68
SVM decision value 0.92
SVM RNA-class probability 0.881554
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12955396 112 + 22407834
CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAAAUUCGAAUGGAAAAACUCAUUGUACAUAUAUAUACAUUUGAUGGUGUGGGAAAAUACAAAUUUGCGAACAGA
.(((..(....).)))..........(((((((.(((((........)))))........((((......(((((........)))))......)))))))))))....... ( -22.50)
>DroSec_CAF1 166 95 + 1
CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUUUUCCAGAUUCGAAUGGAAGAACUCA-----------------UUCGAUGGUGUGGGAAAAUACAAAUUUGGGAACAAA
.(((..(....).)))..............(((((((((.((((((((((......)))-----------------)))))..)).))))))))).....((((....)))) ( -27.30)
>DroSim_CAF1 286 95 + 1
CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAGAUUCGAAUGGAAAAACUCA-----------------UUCGAUGGUGUGGGAAAAUACAAAUUUGGGAACAAA
.(((..(....).)))..................((((((((((((((((......)))-----------------)))))..((((......))))..))))))))..... ( -24.50)
>DroYak_CAF1 268 102 + 1
CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAGAUUCGAAUGGAAAAACUCUUUGUA----------CAUUCGAUGGUGUGGGAAAAUACGAAUUUGGUAACGAA
.(((..(....).)))....................(((((((((((((..(((....)))...----------)))))....((((......))))))))))))....... ( -23.40)
>consensus
CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAGAUUCGAAUGGAAAAACUCA_________________UUCGAUGGUGUGGGAAAAUACAAAUUUGGGAACAAA
.(((..(....).)))...........((((((.(((((........)))))...............................((((......)))).))))))........ (-16.73 = -16.73 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:41 2006