Locus 451

Sequence ID 2L_DroMel_CAF1
Location 1,334,009 – 1,334,107
Length 98
Max. P 0.505068
window730

overview

Window 0

Location 1,334,009 – 1,334,107
Length 98
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 80.88
Mean single sequence MFE -24.29
Consensus MFE -15.09
Energy contribution -16.33
Covariance contribution 1.24
Combinations/Pair 1.14
Mean z-score -1.67
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.505068
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1334009 98 + 22407834
UCUAGUCAACCUGGUUCAAUAUUCAGGAAGUGCA------AAAAAGCUUCUGAUUUUAUUACAGGGUACUUGAAAGUACCACGGGUACAUUGGUACAGAAAAUU
.(((((..(((((....((((.((((.((((...------.....))))))))...))))....((((((....)))))).)))))..)))))........... ( -23.10)
>DroSec_CAF1 91344 98 + 1
UCUAGUCAACCUGGUUCGAUCUUCAGGAAGUGCA------AGAAAGCCUCUGAUUUUAUUACAGGGUACUAGAAAGUACCACGAGAAAAUUGGCUCAGAAAAUU
(((((((((.....((((....((((..((.((.------.....))))))))...........((((((....)))))).))))....)))))).)))..... ( -23.00)
>DroSim_CAF1 95281 98 + 1
UCUAGUCAACCUGGUUCGAUAUUCAGGAAGUGCA------AAAAAGCCUCUGAUUUUAUUACAGGGUACUAGAAAGUACCACGAGAACAUUGGUACAGAUAAGU
((((((...((((....((((.((((..((.((.------.....))))))))...)))).))))..))))))..((((((.........))))))........ ( -25.30)
>DroEre_CAF1 104540 96 + 1
UCUAGUCAACCUGCUUCGGUAUUCAGGAAGUAUA------AAAAAGCCACUGACUUUCUUACAGGGUACUG--AGAUAGCACGGGUAUAUUGGUGCGCUACAGU
..((((...((((((((((((((((((((((...------............)))))))....))))))))--)...)))).))((((....)))))))).... ( -22.16)
>DroYak_CAF1 94972 104 + 1
UCUAGUUCACCUGCUUCGAUAUUCAGGGAGUAUACAUAAAAAAAAUCACCUGACUUUCUUACAGGGUACUAGAAAGUACCACGGGUAUACUGGUACACUAAAGU
((((((...((((....((...(((((((................)).)))))...))...))))..))))))..((((((.(......)))))))........ ( -27.89)
>consensus
UCUAGUCAACCUGGUUCGAUAUUCAGGAAGUGCA______AAAAAGCCUCUGAUUUUAUUACAGGGUACUAGAAAGUACCACGGGUACAUUGGUACAGAAAAGU
((((((...((((.........(((((.....................)))))........))))..))))))..((((((.........))))))........ (-15.09 = -16.33 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:32 2006