Locus 4507

Sequence ID 2L_DroMel_CAF1
Location 12,924,034 – 12,924,137
Length 103
Max. P 0.581132
window7087

overview

Window 7

Location 12,924,034 – 12,924,137
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.79
Mean single sequence MFE -27.57
Consensus MFE -11.48
Energy contribution -12.18
Covariance contribution 0.70
Combinations/Pair 1.43
Mean z-score -2.03
Structure conservation index 0.42
SVM decision value 0.10
SVM RNA-class probability 0.581132
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12924034 103 - 22407834
AUUUGCU-----------UACUUGUAGUUCAUUUUAGUGUUGAACUCUGACUGACGCUCCUUAGCGUACAUAGUAA------UCAACAUCAUGCACACCCUGCAGGAAUGAGCUAUUUCA
.......-----------.....((((((((((((.(((((((...(((....(((((....)))))...)))...------)))))))..((((.....)))))))))))))))).... ( -28.30)
>DroSec_CAF1 103201 111 - 1
AUUUGCUAUAGGC---AUUACUUGUAGUUCAUUUUAGUGUUGAACUCUGUCUGACGCUCCUUAGCGUACAUAGUUA------UCAGCAUCAUGCACACCCUGCAGGAAUGCGCUAUUUCA
...((..((((((---(((.(((((((.........(((((((...((((...(((((....)))))..))))...------)))))))..........)))))))))))).))))..)) ( -32.31)
>DroSim_CAF1 107211 111 - 1
AUUUGCUAUAGGC---AUUACUUGUAGUUCAUUUUAGUGUUGAACUCUGUCUGACGUUCCUUAGCGUACAUAGUUA------UCAGCAUCAUGCACACCCUGCAGGAAUGCGCUAUUUCA
...((..((((((---(((.(((((((.........(((((((...((((...((((......))))..))))...------)))))))..........)))))))))))).))))..)) ( -30.11)
>DroEre_CAF1 109978 111 - 1
AUGGGCUGGAGAA---AUUACUUGUAGUUCAUUUUAGUAUUGAACUCCGACUGACGCUCCUUCGCGUACAUAGUGA------UCAGCAUCAUGCACACCCUGCAGCAAUGCGCUAUUUCA
...(((.((((..---.(((.(((.((((((.........)))))).))).)))..)))).((((.......))))------...((((..((((.....))))...)))))))...... ( -27.30)
>DroYak_CAF1 105259 111 - 1
AUUGGCGAUAUAA---AUUACUUGUAGUUCAUUUUAGUAUUGAACUCCGACUGACGCUCCUUCGCGUACAUCGUCA------CAAGCAUCAUGCACACCCUGCUGAAGUGUGCUAUUUCA
..(((((((....---.....(((.((((((.........)))))).)))...((((......))))..)))))))------..........((((((.........))))))....... ( -26.60)
>DroAna_CAF1 123804 114 - 1
AUUUGCAUUAAGCCUACUUACUUAAAAUUCGUCUUUGUGUUGAACUCCACCUGCCUCUCUUUUAAAUAGAACGUCACAAAUGUGACUAUUAUUCGCGUC------GCAUGGGCGACUUCC
.......(((((........)))))...((((((.((((.((((.............(((.......)))..(((((....))))).....))))...)------))).))))))..... ( -20.80)
>consensus
AUUUGCUAUAGGC___AUUACUUGUAGUUCAUUUUAGUGUUGAACUCCGACUGACGCUCCUUAGCGUACAUAGUCA______UCAGCAUCAUGCACACCCUGCAGGAAUGCGCUAUUUCA
....(((((................((((((.........)))))).......((((......))))..)))))...........((((..((((.....))))...))))......... (-11.48 = -12.18 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:27 2006