Locus 4505

Sequence ID 2L_DroMel_CAF1
Location 12,914,187 – 12,914,298
Length 111
Max. P 0.580182
window7085

overview

Window 5

Location 12,914,187 – 12,914,298
Length 111
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 81.49
Mean single sequence MFE -34.27
Consensus MFE -20.39
Energy contribution -22.15
Covariance contribution 1.76
Combinations/Pair 1.38
Mean z-score -1.90
Structure conservation index 0.60
SVM decision value 0.09
SVM RNA-class probability 0.580182
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12914187 111 + 22407834
UCGCCAAUCAUCUGGAGUCUACUGGGGAACCAGGUUACGUUCACGUAAGUGGACGCACCCUAAGUAUGCUAAA--UCCAGCGGAUUAUACUAUAUUAAGUGGUACGCAAAAGG
..((.((((..(((((((.((((((....))(((...(((((((....)))))))...))).)))).))....--)))))..)))).((((((.....)))))).))...... ( -34.40)
>DroSec_CAF1 93277 111 + 1
UCGCCAAUCAUCUGGAGUCCACUGGGAAACCAGGUUACGUUCACGUUAGUGGACGAACCCUAAGUAUGCUAAA--UCCAGCGGAUUAUACUAUAUUAAGUGGUCCGCAAAGGG
...((.......((((......(((....)))((((.(((((((....)))))))))))..............--))))(((((((((..........)))))))))...)). ( -37.90)
>DroSim_CAF1 96983 111 + 1
UCGCCAAUCAUCUGGAGUCCACUGGGAAACCAGGUUACGUUCACGUUAGUGGACGAACCCUAAGUAUGCUAAA--UCCAGCGGAUUAUACUAUAUUAAGUGGUCCGGAAAGGG
..........((((((..(((((((....)).((((.(((((((....)))))))))))...((((((....(--(((...))))))))))......)))))))))))..... ( -37.90)
>DroEre_CAF1 100042 111 + 1
UCGCCAAUCAUCUGGAGUCCUCUGGGAAACCAGGUUACGUACACGUGAGUGGACGAACCCUGAGUAUGCUGAA--UCCAGCGGAUUAUACCAUAUUGACUGGUACGCCCAAGG
..((((.(((..((((((((..(((....)))((((.(((.(((....))).)))))))........((((..--..)))))))))...)))...))).)))).......... ( -38.30)
>DroYak_CAF1 95405 111 + 1
UCGCCAAUCAUCUGGAGUCCACUGGGAAGCCCGGUUACGUUCACGUUAGUGGACGAACGCUAAGUAUGCUGAA--UCCGUCGGAUUAUACUAUAUUAACUGGCACGCAAAAGG
..(((........((..(((....)))..)).((((((((((((....))))))).......((((((((((.--....))))..))))))....)))))))).......... ( -29.90)
>DroAna_CAF1 113502 111 + 1
UUGCCAGUCAUUUGGAGUCCACUGGCGAAUCGGGCUACGUACAUGUCAGUAAUGCCACAAUGCGAAAGCUGAAAUUUCAAGGAAUUAAAGUAAA--AGCAGGAACGGCAAAAG
(((((..((...(((.....(((((((...((.....))....)))))))....)))...(((....(((..(((((....)))))..)))...--.))).))..)))))... ( -27.20)
>consensus
UCGCCAAUCAUCUGGAGUCCACUGGGAAACCAGGUUACGUUCACGUUAGUGGACGAACCCUAAGUAUGCUAAA__UCCAGCGGAUUAUACUAUAUUAACUGGUACGCAAAAGG
..(((((((..(((((.....((((....))))....(((((((....)))))))....................)))))..))))..(((......)))))).......... (-20.39 = -22.15 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:25 2006