| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,910,146 – 12,910,242 |
| Length | 96 |
| Max. P | 0.829979 |
| Location | 12,910,146 – 12,910,242 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.00 |
| Mean single sequence MFE | -19.48 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.93 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12910146 96 - 22407834 UUACCUUUCCCAUUUUCCCCUUCU---UCGC-------CCUCUCCAACCGCCAGCCAUCCCU--UUGCAGGACUGGCAUGUAAAAGUGCGAUUAUAGUCGCAUAAUUA ........................---....-------...........(((((((......--.....)).)))))........(((((((....)))))))..... ( -19.30) >DroSec_CAF1 87776 96 - 1 UUACCUUUCCCAUUUUCCCCCACU---UCGC-------GCUCCCCACCCGCCAGCCAUCCCU--UUGCAGGACUGGCAUGUAAAAGUGCGAUUAUAGUCGCAUAAUUA ....((((..(((...........---..((-------(.........)))..((((..(((--....)))..)))))))..))))((((((....))))))...... ( -20.20) >DroSim_CAF1 92865 96 - 1 UUACCUUUCCCAUUUUCCGCCACU---ACGC-------CCUCCCCGCCCGCCAGCCAUCCCU--UUGCAGGACUGGCAUGUAAAAGUGCGAUUAUAGUCGCAUAAUUA ....((((..(((.....((....---..))-------...........(((((((......--.....)).))))))))..))))((((((....))))))...... ( -20.60) >DroEre_CAF1 92954 96 - 1 UUACCUUUCCCAUUUUCCCCCUCU---GCCC-------CCUCCCCGGUCGACAGCCUUCCCU--UUGCAGGACUGGCAUGUAAAAGUGCGAUUAUAGUCGCAUAAUUA ....((((..(((........((.---(((.-------.......))).))..(((.(((..--.....)))..))))))..))))((((((....))))))...... ( -19.70) >DroYak_CAF1 91379 103 - 1 UUACCUUUCCCAUUUUCCCCCUCA---ACCCUCAACACUCUCCCCGCCCGACAACCAUCCCU--UUGCAGGACUGGCAUGUAAAAGUGCGAUUAUAGUCGCAUAAUUA ........................---.......................(((.(((..(((--....)))..)))..)))....(((((((....)))))))..... ( -14.40) >DroAna_CAF1 109467 94 - 1 ---CCAUCGCCACUACCCGCCACUUCUUUGC-------ACUUUCCAGCU----GCCUUCCCUCAUACCGGUACUGGCAUGUAAAAGUGCGAUUAUAGUCGCAUAAUUA ---...............((.(((...((((-------(((((((((.(----(((............))))))))......)))))))))....))).))....... ( -22.70) >consensus UUACCUUUCCCAUUUUCCCCCACU___UCGC_______CCUCCCCACCCGCCAGCCAUCCCU__UUGCAGGACUGGCAUGUAAAAGUGCGAUUAUAGUCGCAUAAUUA .....................................................((((..(((......)))..))))........(((((((....)))))))..... (-14.40 = -14.93 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:22 2006