Locus 450

Sequence ID 2L_DroMel_CAF1
Location 1,331,885 – 1,331,983
Length 98
Max. P 0.929084
window729

overview

Window 9

Location 1,331,885 – 1,331,983
Length 98
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 91.03
Mean single sequence MFE -22.98
Consensus MFE -20.51
Energy contribution -19.82
Covariance contribution -0.69
Combinations/Pair 1.15
Mean z-score -1.93
Structure conservation index 0.89
SVM decision value 1.20
SVM RNA-class probability 0.929084
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1331885 98 - 22407834
CAA-GCUAUUAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCUCAGAUACAGUUUACGUUUGCAUUUC
(((-((............(((......)))((((....((((.....))))(((((((((((.........)).))))).)))))))))))))...... ( -21.50)
>DroSec_CAF1 89263 98 - 1
AAA-GCUAUCAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUACAGUUUACGUUUGCAUUUC
...-.....(((((....(((......)))((((....((((.....))))((((((((((.(........).)))))).)))))))))))))...... ( -22.90)
>DroSim_CAF1 92772 98 - 1
CAA-GCUAUUAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUACAGUUUACGUUUGCAUUUC
(((-((............(((......)))((((....((((.....))))((((((((((.(........).)))))).)))))))))))))...... ( -22.80)
>DroYak_CAF1 92813 96 - 1
---UUCAAUUAAACUCCUGGCUGCAUUGCCAUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUGCAGUCUACGUUUGCAUUUC
---......(((((....(((((((((((((.((((..((((.....))))...))))))))..............)))))))))...)))))...... ( -24.73)
>consensus
CAA_GCUAUUAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUACAGUUUACGUUUGCAUUUC
.........(((((....(((......)))(((......(((.....)))(((((((((((.(........).)))))).)))))))))))))...... (-20.51 = -19.82 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:31 2006